Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00804 ATGAGTAGCCTGGTTGAAAGGCTTCGGGTAAGATCAGATCGCAAGCCAGTTTATAATATAGATGAGTCAGATGATGATGACTTTTTGCCTGGGAAACCTGGGAGAACCGAAGAAATGTTTGAGAGGATAGTTAGAAGTGATGCTAAAGAGAATTCATGCCAAGCCTGTGGAGAAAGCGAAGATCTTCTTAGCTGTGAAACTTGTACTTATGCTTTTCATCCTAAGTGCTTACTTCGACCGCTTAAAGCTCCGCTTCCGGATAATTGGAGGTGCCCTGAATGTGTTAGCCCGTTAAGTGATATTGAAAAGATATTAGATTGTGAAATGCGCCCAACTGTAGTGGGTGATGGCGAGGCCTCAAAACTGGGCTCAAAGCAAAATTTTGTCAAACAATATCTTGTTAAGTGGAAGGGACTCTCATATTTGCACTGCACGTGGGTTTCAGAGAAAGAGTTTCTGAAAGCTTTCAAGTCAAACCCTCGTCTAAAGACCAAAGTGAACAATTTTCACCGTCAAATGGCATCTTCAAATACTTCTGAGGAAGACTTCGTTGCCATTCGACCTGAATGGACGACAGTTGATCGTATACTTGCTTGCAGGGGTCATGATGATGAAAAGGAATATCTTGTGAAGTGGAAAGAACTTTTATATGATGAATGCTATTGGGAGTCTGAGTCTGATATTTCTGCATTTCAGCCAGAAATAGAAAGATTTACAAAATTTCAGTCTAGGTCTAGGAGAAGTGCTTCTAGTAAGCAGAAAAGTAGTGGTAAGGATGCTGCCGAAGAAAAAAAGCAGAAAAGCAGTGGTAAGGATGGTGCTGAAGAAAAAAAACAGCAGAAGGAATTTCAACACTATGAACATAGCCCCAGCTTTCTTTCAGGCGGCACCCTGCATCCATATCAGCTTGAGGGTTTGAACTTCTTACGTTTCTCATGGTCTAAGCAAACTCATGTTATACTTGCTGATGAAATGGGACTAGGCAAAACCATACAAAGTATTGCCTTTTTAGCATCTCTCTTTGAAGAGAGAGTGTTTCCCCATTTAGTGGTTGCTCCCCTGTCAACTCTCCGTAACTGGGAACGTGAATTTGCAACATGGGCGCCTCATATGAATGTTGTTATGTATGTTGGATCTGCCCAAGCTCGAGCTGTTATAAGAGAGTATGAATTTTACTTTCCAAAGAAACAGAAGAAGATCAAGAAAAAGAAATCTGGGAAAATAGTCAGTGAGAGCAAGCAAGATAGGATCAAATTTGATGTGCTCTTGACATCATATGAAATGATCAACCTCGACTCAGCATCGTTGAAACCTATAATGTGGGAGTGCATGATCGTTGATGAAGGCCACCGACTTAAAAATAAGGATTCAAAATTATTTTCTTCATTGAAGCAATATTCAAGCAGACATCGTGTACTTTTGACTGGAACTCCTCTTCAGAACAATTTGGATGAACTTTTTATGCTAATGCACTTCCTTGATGCTGGGAAGTTTGGAAGCTTAGAAGAGTTCCAGGAAGAGTTTAGAGATATTAATCAGGAGGAGCAGATATCAAGGCTTCACAAAATGTTGGCTCCACACCTCCTTCGAAGAGTGAAGAAAGATGTGATGAAGGACTTACCTCCTAAAAAGGAACTTATTTTAAGAGTTGAGTTAAGCAGCAAACAGAAAGAGTATTATAAGGCAATTCTGACACGTAATTATCAAATATTAACTCGTCGTGGTGGCGCACAGATTTCTCTTATCAATGTTGTTATGGAATTGCGCAAACTATGTTGTCATCCTTACATGTTGGAAGGAGTTGAGCCAGATATTGAAGATCCAAAAGAAGCATATAAACAGCTACTGGAATCATCAGGGAAGTTGCAATTGTTGGACAAGATGATGGTGAAGCTTAAAGAGCAAGGACATAGAGTCCTTATATATTCACAATTTCAGCACATGCTGGACCTACTAGAAGATTACTGTGCATACAAGAATTGGCAGTATGAAAGGATAGATGGCAAGGTTGCTGGAGCTGAAAGACAGGTAAGGATAGATCGGTTTAATGCCAAAAATTCCTCGAGATTTTGCTTTCTTCTTTCAACCAGAGCTGGAGGATTGGGAATAAACCTTGCAACTGCTGACACAGTTATTATATATGACAGTGATTGGAATCCTCATGCTGATCTACAAGCTATGGCTAGAGCTCATCGACTCGGACAAACTAACAAGGTGCTGATTTATAGGCTTGTAACACGAGGATCCATTGAAGAAAGGATGATGCAAATGACGAAGAAGAAAATGGTGTTAGAACATTTGGTTGTTGGAAGGTTAAAGGCTCAAAACATTAATCAGGAAGAGTTGGATGATATCATTAGGTATGGCTCAAAGGAGTTATTTGCTGATGAGAATGATGAAGCTGGCAAATCCCGCCAAATTCATTACGACGATGCTTCAATAGATAGATTGTTGGATCGTGAGCAAGTTGGAGTTGAAGAAGCTATATTGGATGATGAAGATGATGATGGATTTCTGAAGGCTTTTAAGGTGGCAAACTTTGAATATATTGATGAGGTTGAGGCTGCAGCAGAAGAGGCGAGGAAAAAAGAAAGGGAAAATAAAAATACTGTTAAAAATTCGGATAGAGCAAATTACTGGGAGGATTTGTTGAGAGACAGATATGAAGAGCATAAAACTGAGGAGTTTAGTTCCTTAGGCAAGGGCAAGCGGAACCGCAAGCTGATGGCTTCTGTTGAGGAGGATGATCTTGCTGGCCTAGAAGATGTGAGTTCTGATGGTGAAGATGACAACTATGAAGCAGATCTTACTGATGGTGATTCAAATTCAACTGGAACTACTTCAGGGAGAAGACCTTACAGAAAGAAAGCCCGTGCAGATAGTGCAGAGCCACTTCCTTTGATGGAAGGTGAGGGAAGATCATTCAGAGTACTTGGTTTCAATCAAAGCCAGAGGGCTCAATTTGTGCAAATTTTGATGAGGTTTGGAGTTGGTGATTATGATTGGAAGGAGTTTACTCCCCGCTTGAAACAAAAGACTCATGAAGAAATCAAAGATTATGGAGTCCTTTTCTTGTCTCATATCGCTGAAGACATATCTGATTCTCCTACATTCTCAGATGGTGTTCCAAAAGAAGGACTTAGAATACATGATGTACTAGTTAGGATTGCAGTTCTTCTCTTGATAAGAGAGAAAGTGAAGTTTGCATCAGAAAAGGATCCTGGAACTCTTCTTTACACGGATGACATCTTGTTGCGGTATCCTGGTTTGAAGGGTGGAAAGATATGGAAGGAGGAGCATGATATAGTGTTACTAAGTGCTGTGTTGAAGCATGGATATGGAAGGTGGCAAGCAATTGTGGATGACAAGGATCTAAAGATTCAGGAGGTCATCTGTCAGGAGTTGAATCTTCCCATAATAAATTTACCAGTACCTGGACAAGTTCTTACCCAGGCGCAAAATGGTGCAAATTCAACAAATGTAGAAGCAATGGCCAACCAATCTGGGGAAAATGGTGGGAATGATACGGTAGCTGATGGTGTGCCTGGTTCTGGTGATGCTAGGAACCAAACACCGTTATATCAAGAGTCTTCAATATTATATCATTTTAGAGACATGCAGAGAAGACAGGTTGAGTTTGTAAAAAAGAGGGTTCTTCTGTTGGAAAAAGGTCTCTATGCTGAGTACCAGAAAGAATACTTTGGTGACCATAATACAAATGAAGCCATGAATGTAGAATTTAAAAATGAACCAAAGGATTCAAATGTTCCAAATTATAAATCAGGGGAGATTGACAAGAAAATGATTGATCAACTGCCTCAAGTAGAAGAAATAGCTTCTGAAGAATTTTCTGCTGCTTCTTGTGATAGTGACCCGAATCGATCAGAATTGGTTCGACTTTACAATGAGATGTGCAGGGTTGCGGAGGAAAACACCATTGAATTGGCTGGAGGACCTGCAGATGTCGGCCCGATGAAGAACTTGCCTCCCCTAGAAACAGTTTGTGAAGACATCAATAAAATTCTATCACCCTCTAAGCAAGATGATGGCACTGCGGAAATGCCAATACCAAGTCCAGGTATCAAAGCAGAGGCTTTATTAGAGAGTGAAGTGGCTGGGTCCAGATTGCCCTCAACTCCACAAGATGACAGCAAACCTGACAATGCAGTAAACAAGCAGGGAAAAGATGTGGCGACAGGGACCGATAACGGAAAAGAAAGCGGATCAGAGACGATGGGAGGTGATGTTGAAATGGGCGAAGCTAACAATGATGCTGAATTGAATGAAAACATGGATAAACCTGATCCGAGGGTCCACGTGTTGGATGAATAA 4332 0.4079 MSSLVERLRVRSDRKPVYNIDESDDDDFLPGKPGRTEEMFERIVRSDAKENSCQACGESEDLLSCETCTYAFHPKCLLRPLKAPLPDNWRCPECVSPLSDIEKILDCEMRPTVVGDGEASKLGSKQNFVKQYLVKWKGLSYLHCTWVSEKEFLKAFKSNPRLKTKVNNFHRQMASSNTSEEDFVAIRPEWTTVDRILACRGHDDEKEYLVKWKELLYDECYWESESDISAFQPEIERFTKFQSRSRRSASSKQKSSGKDAAEEKKQKSSGKDGAEEKKQQKEFQHYEHSPSFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEERVFPHLVVAPLSTLRNWEREFATWAPHMNVVMYVGSAQARAVIREYEFYFPKKQKKIKKKKSGKIVSESKQDRIKFDVLLTSYEMINLDSASLKPIMWECMIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFRDINQEEQISRLHKMLAPHLLRRVKKDVMKDLPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDPKEAYKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCAYKNWQYERIDGKVAGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLVTRGSIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEAGKSRQIHYDDASIDRLLDREQVGVEEAILDDEDDDGFLKAFKVANFEYIDEVEAAAEEARKKERENKNTVKNSDRANYWEDLLRDRYEEHKTEEFSSLGKGKRNRKLMASVEEDDLAGLEDVSSDGEDDNYEADLTDGDSNSTGTTSGRRPYRKKARADSAEPLPLMEGEGRSFRVLGFNQSQRAQFVQILMRFGVGDYDWKEFTPRLKQKTHEEIKDYGVLFLSHIAEDISDSPTFSDGVPKEGLRIHDVLVRIAVLLLIREKVKFASEKDPGTLLYTDDILLRYPGLKGGKIWKEEHDIVLLSAVLKHGYGRWQAIVDDKDLKIQEVICQELNLPIINLPVPGQVLTQAQNGANSTNVEAMANQSGENGGNDTVADGVPGSGDARNQTPLYQESSILYHFRDMQRRQVEFVKKRVLLLEKGLYAEYQKEYFGDHNTNEAMNVEFKNEPKDSNVPNYKSGEIDKKMIDQLPQVEEIASEEFSAASCDSDPNRSELVRLYNEMCRVAEENTIELAGGPADVGPMKNLPPLETVCEDINKILSPSKQDDGTAEMPIPSPGIKAEALLESEVAGSRLPSTPQDDSKPDNAVNKQGKDVATGTDNGKESGSETMGGDVEMGEANNDAELNENMDKPDPRVHVLDE 1443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00804 1443 ProSiteProfiles Rubredoxin-like domain profile. 60 104 IPR024934 GO:0005506
Accr3g00804 1443 MobiDBLite consensus disorder prediction 1426 1443 - -
Accr3g00804 1443 SMART chromo_7 98 174 IPR000953 -
Accr3g00804 1443 SMART chromo_7 189 243 IPR000953 -
Accr3g00804 1443 Pfam CHD subfamily II, SANT-like domain 947 1073 IPR009462 GO:0003677|GO:0006338
Accr3g00804 1443 Gene3D - 290 540 IPR038718 -
Accr3g00804 1443 MobiDBLite consensus disorder prediction 1369 1443 - -
Accr3g00804 1443 ProSiteProfiles Chromo and chromo shadow domain profile. 99 181 IPR000953 -
Accr3g00804 1443 Pfam SNF2-related domain 318 598 IPR000330 GO:0005524|GO:0140658
Accr3g00804 1443 MobiDBLite consensus disorder prediction 1394 1408 - -
Accr3g00804 1443 SMART PHD_3 52 95 IPR001965 -
Accr3g00804 1443 MobiDBLite consensus disorder prediction 915 965 - -
Accr3g00804 1443 Pfam PHD-finger 53 95 IPR019787 -
Accr3g00804 1443 SUPERFAMILY Chromo domain-like 65 175 IPR016197 -
Accr3g00804 1443 MobiDBLite consensus disorder prediction 915 936 - -
Accr3g00804 1443 SUPERFAMILY Chromo domain-like 179 243 IPR016197 -
Accr3g00804 1443 CDD CD2_tandem 189 238 - -
Accr3g00804 1443 Gene3D - 97 187 - -
Accr3g00804 1443 SMART ultradead3 294 507 IPR014001 -
Accr3g00804 1443 Pfam CHD subfamily II, DUF1087 855 916 IPR009463 -
Accr3g00804 1443 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 533 789 IPR027417 -
Accr3g00804 1443 Gene3D - 188 241 - -
Accr3g00804 1443 ProSiteProfiles Zinc finger PHD-type profile. 50 97 IPR019787 -
Accr3g00804 1443 MobiDBLite consensus disorder prediction 242 281 - -
Accr3g00804 1443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 96 IPR013083 -
Accr3g00804 1443 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 310 496 IPR014001 -
Accr3g00804 1443 SMART helicmild6 650 734 IPR001650 -
Accr3g00804 1443 CDD CD1_tandem 101 171 - -
Accr3g00804 1443 CDD SF2_C_SNF 619 745 - -
Accr3g00804 1443 Pfam Helicase conserved C-terminal domain 621 734 IPR001650 -
Accr3g00804 1443 Pfam Chromo (CHRromatin Organisation MOdifier) domain 192 240 IPR023780 -
Accr3g00804 1443 Pfam Chromo (CHRromatin Organisation MOdifier) domain 101 155 IPR023780 -
Accr3g00804 1443 ProSitePatterns Zinc finger PHD-type signature. 53 94 IPR019786 -
Accr3g00804 1443 SMART DUF1086_2 924 1084 IPR009462 GO:0003677|GO:0006338
Accr3g00804 1443 Gene3D - 541 765 IPR027417 -
Accr3g00804 1443 Gene3D - 1050 1186 - -
Accr3g00804 1443 SMART DUF1087_2 854 919 IPR009463 -
Accr3g00804 1443 Coils Coil 846 873 - -
Accr3g00804 1443 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 287 531 IPR027417 -
Accr3g00804 1443 MobiDBLite consensus disorder prediction 252 281 - -
Accr3g00804 1443 ProSiteProfiles Chromo and chromo shadow domain profile. 191 253 IPR000953 -
Accr3g00804 1443 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 46 1344 - -
Accr3g00804 1443 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 624 785 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00804 Accr-Chr3 8958042 8973852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00804 320 795 RAD5 or RAD16-like Gene Family AT1G02670 22.302 1.06e-28 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Accr3g00804 SNF2_N 8.1e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00804 K11643 - gmx:100790230 2252.25