Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00798 ATGGAAGACGAAAACTACCAAGTAGACAAGATCAAGACAGAAACTTTATTTGATCTTAATGCTTCTGATCTCGATGAGAACAACCCCGAACTCAATCTCATCACTTGCTTGGATCGGAGTTCATCAAAAACATCATCAGAAAGCTGTGCCGGCGGTGGTGGTGGTTCTGTTTCAGAAGCAGAACCAAGATTTTTCTCATGTAATTACTGCCAGAGAAAGTTCTACAGCTCACAAGCTCTTGGGGGACACCAAAATGCACACAAGAGAGAGAGATCAATAGCGAAAAGAGGACAGAGACTTGGAACACAAATACTGGCTTCAGGTTTTGGGCATCCTTTTCTGCATAATTATGGGTATGCGAGCATGGCTTCTCTGCCTCTCTATGGTGCTTCTTGCAATAATAGGCCCCTGGGGATTCAGGCTCATTCTTTGATTCACAAGCCGTTTAATAATAACGTTCATAATAGGGGTTGGTCACAGCAGCCTGGGATAGGGAAGCTAGAGATGGTGAATTTTCATAAAACGACGTCGTCGGGATTGGCTTCGAGAGGCAGTGTGGGGAGGTTTGAAATCGTGAAGGCTAAGATGGGTTCTGCAGAAAAGGAAGAGATGAGTGGGTATTTGGTGGGTGGGACTCATTGTTTGAAGGCTAATCCGGAAGAAATGAAGCATCTTGATTTGTCTCTCAAGCTTTAA 696 0.4425 MEDENYQVDKIKTETLFDLNASDLDENNPELNLITCLDRSSSKTSSESCAGGGGGSVSEAEPRFFSCNYCQRKFYSSQALGGHQNAHKRERSIAKRGQRLGTQILASGFGHPFLHNYGYASMASLPLYGASCNNRPLGIQAHSLIHKPFNNNVHNRGWSQQPGIGKLEMVNFHKTTSSGLASRGSVGRFEIVKAKMGSAEKEEMSGYLVGGTHCLKANPEEMKHLDLSLKL 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00798 231 Gene3D Classic Zinc Finger 53 107 - -
Accr3g00798 231 SUPERFAMILY beta-beta-alpha zinc fingers 62 92 IPR036236 -
Accr3g00798 231 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 9 231 IPR044246 GO:0009788
Accr3g00798 231 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Accr3g00798 231 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 92 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00798 Accr-Chr3 8850641 8851336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00798 3 231 C2H2 Transcription Factor Family AT5G10970 41.057 3.63e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr3g00798 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00798 - - pcin:129303916 347.436