Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00789 ATGGCGTACCACAACCACCATCTCTCTCAAGACCTACCGCTCCACCATTTCACAGGGCAATCTCATCATCATCATCATCAGCAGCAGCAGCAGCAGAACCAGGCGCTGACTGATAACTCTTTGCGAACGATATTGCAGGACCCAACCAGTAAGGCCGGCTCCGATCCCCACCAACACCACCACTCGCTTCAGACCGCTCCCAATTGGCTCAACAACGCTCTCCTCCGAACTCACTACACCGACAACAATAACGGCAACAACAGTAACACCACTACTCCCAACAATACCAACGCCACCAATTTCCTCCACCTCCACACCTCCGCCTCCGACTCCACTGGAGCTGCTTCCCAATCCTCCAGCCAATGGCTGGCACGCCCGATCCTCAACCGGAATCATAGTGACGTCATTGACGACGTTACCGCCGGGGACTCTATCATCGCCGGTGCGACCATGTCCCATGAGTCTGCGGATTTAAAGGCGACCGGCGACAATCTCAATAGCAAGGGCGAGGCGGTGGTGGTGGACAGCGCCGGCACCACTGGGGACGGTTTGATGAACTGGCAGAATGCTAGGTTCAAGGCGGAGATTCTTGCCCACCCACTGTACGAACAGCTGCTATCGGCACATGTGGCGTGCCTGCGGATCGCCACGCCGGTCGACCAGTTGCCGAGGATCGATGCTCAGCTGGCTCAGTCGCAGAATGTGGTTACCAAGTACTCGGCGCTTGGACACGGGAGCCAGAGCATGGTTGGGGACGATAAGGAACTCGATCAGTTCATGTCTCACTATGTCTTGTTGCTTTGTTCATTCAAAGAACAACTTCAACAACATGTCAGGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGAGATAGAGCAATCCTTACAAAGTCTAACAGGGGTTTCACCAGGAGAAGGCACAGGGGCAACAATGTCAGATGATGAAGATGACCAGGTGGACAGTGACGCCAACCTGTTTGATGGTAGTTTGGATGGTTCAGACATGGGGTTTGGTCCCCTTATTCCAACGGAGAATGAGAGGTCCCTCATGGAGCGCGTGAGGCAGGAATTAAAGCATGAACTCAAACAGGGTTACAAGGAGAAAATTGTGGACATAAGAGAGGAAATTCTGCGCAAGAGACGAGCAGGGAAACTTCCTGGTGACACAACCTCTGTTCTTAAAGCTTGGTGGCAGTCACATTCCAAATGGCCTTACCCTACTGAGGAAGATAAGGCAAGGTTGGTTCAGGAAACTGGTTTGCAATTGAAGCAGATTAACAATTGGTTTATCAACCAAAGGAAGAGAAACTGGCACAGCAATCCGTCCACCTCAACGGTTCTGAAGAGCAAGCGCAAAAGTAATGCAGGTGATAACAGTAATGCCGATCGTTACACTTAG 1401 0.5189 MAYHNHHLSQDLPLHHFTGQSHHHHHQQQQQQNQALTDNSLRTILQDPTSKAGSDPHQHHHSLQTAPNWLNNALLRTHYTDNNNGNNSNTTTPNNTNATNFLHLHTSASDSTGAASQSSSQWLARPILNRNHSDVIDDVTAGDSIIAGATMSHESADLKATGDNLNSKGEAVVVDSAGTTGDGLMNWQNARFKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVTKYSALGHGSQSMVGDDKELDQFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSDANLFDGSLDGSDMGFGPLIPTENERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKSNAGDNSNADRYT 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00789 466 ProSiteProfiles 'Homeobox' domain profile. 377 440 IPR001356 GO:0003677
Accr3g00789 466 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 20 445 - -
Accr3g00789 466 SMART KNOX1_2 190 234 IPR005540 GO:0003677|GO:0005634
Accr3g00789 466 Pfam KNOX2 domain 250 300 IPR005541 GO:0003677|GO:0005634
Accr3g00789 466 Pfam Homeobox KN domain 397 436 IPR008422 GO:0003677|GO:0006355
Accr3g00789 466 Pfam ELK domain 357 378 IPR005539 GO:0003677
Accr3g00789 466 Gene3D - 378 439 - -
Accr3g00789 466 ProSiteProfiles ELK domain profile. 357 377 IPR005539 GO:0003677
Accr3g00789 466 Pfam KNOX1 domain 193 233 IPR005540 GO:0003677|GO:0005634
Accr3g00789 466 SMART ELK_2 357 378 IPR005539 GO:0003677
Accr3g00789 466 MobiDBLite consensus disorder prediction 300 319 - -
Accr3g00789 466 MobiDBLite consensus disorder prediction 78 99 - -
Accr3g00789 466 SUPERFAMILY Homeodomain-like 379 442 IPR009057 -
Accr3g00789 466 MobiDBLite consensus disorder prediction 440 466 - -
Accr3g00789 466 SMART KNOX2_2 246 301 IPR005541 GO:0003677|GO:0005634
Accr3g00789 466 FunFam homeobox protein knotted-1-like 3 isoform X1 378 439 - -
Accr3g00789 466 MobiDBLite consensus disorder prediction 16 35 - -
Accr3g00789 466 CDD homeodomain 380 441 IPR001356 GO:0003677
Accr3g00789 466 SMART HOX_1 379 444 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00789 Accr-Chr3 8751346 8754503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00789 1 453 Homeobox Transcription Factor Family AT5G25220 65.328 0.0 558
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Accr3g00789 KNOX2 1.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00789 - - pcin:129303573 837.41