Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00785 ATGGGGAAGCCCACCGGTAAGAAGAAGGATCCTGTAACACAGAAGGCTGCAAATGCAAGCGGCAAACCTAGCAAGCCCTCTGAGAGGTCTTCCAAAGCTTTTGACGAAGACACAGCAATCTTCATCAACATGTCACAGGATCTCAAGGAAGAAGGCAGTAGACTCTTTCAGAAAAGGGACCATGAAGGGGCTATGTTGAAGTATGAAAAGGCCCTCAAGCTCCTTCCCGTAAACCACATAGATGTGGCACACTTGCGCACCAATATGGCGGCGTGTTATATGCAGCTCGGTCTTGGAGAGTACCCTCGAGCAATTAATGAGTGCAATTTAGCTCTTGAAGTATCACCCAGATATAGCAAGGCTCTATTGAGAAGAGCAAAGTGCTATGAAGCATTGAATCGACTTGATTATGCGCTGAGAGACGTTAATTTTGTTTTGAGCGTGGAGCCTAATAATCTTAATGCATTGGAGCTTCTCGGGAGTTTGAAAAAGACCATGGAAGAAAAAGGTATCACTATTGATGAGAAAGATTTGGCAAGTTTAGAGCAGCCTACCACTGCCCCCATGCATAAAGTGGTGAGAGAAAAACTAAAGAAAAAGAAAAGTAAAAAAAGTGAGAGCAAGGCACAGGAGAAGGTGATTCTCGAGGATACTGTGAATGCTGTTAAAGATAAAGAAGTGGTGACAAAAACAATTGCAAAAAAGGAAGTGGTTCTGAAGCCTGTTAAAGAAGAAAAAGTAATCACAAGGACGGTGAAATTGGTATTTGGAGAGGATATAAGGTGGGCGCAGTTGCCATTGAATTGTAACATGAGGTCGGTGAGGGATATAATTAAGGATCGATTTCCTGGGTTGAAGGGTGTTCTTGTTAAATATAAGGATCAAGAAGGTGATTTGATTACTATCACTACTACTGATGAATTAAGATTAGCTGAACCTTCAGGTGATGCCTTGGGTTCTCTTCGACTCTATGTTACAGAAGTCAATCCAGAGGAGGAACCAATTTATGATGGAATAACCAATGGGGATGAGATGCAAGGTGATAGTATTGAGCATGGGTCAACAGAAGCAGGCAAGGATTTAGCAAACAAGCTGACTAATGTGGAGGATTGGATAATCCAATTTGCTAGGATGTTCAAGAATCATGTTGGGTTTGATTCTGACTCATACTTGGATATGCACGAGGTGTCTATGAAGCTATATTCAGAAGCCTTGGAGGATGTGGTGACAAGTGATGATGCTCAAGAGCTTTTTCAAATCGCTGCAGATAAATTTCAAGAGATGGCAGCTTTGGCATTATTTAATTGGGGTAATGTTCACATGTCCAGTGCAAGGAGACGTGTTTCCATTTCAGAGGACGGGTCAATGGAATCTGCTTATGAGCGAATTAAAGCTGCATACGAGTGGGCAAGAAAGGAGTACAAGAAAGCAGAGAAGAGATATGAGGAAGCCTTGAAAATCAAAACAGACTTCTATGAGGGATTTCTGGCACTTGGCCATCAGCAGTTCGAGCAAGCAAAGCTCTGCTGGTATTACGCAATGGCATGCAAAATGAATTTAGAGGATGGCGCTTCCAGTGAGGTTTTACAACTATATAACAAGGCAGAGGACTGCATGGATAGAGGCATGTTACTGTGGGAGGAGATTGAAGAGCAGCGTTTAAATGGACTATCCAAATTGGATAAATATAGAGCGCATTTGGAAAAAATGGGCTTAGATGGCCTTCTCGAGGATATTTCTTCTGATGAAGCGGCAGAGCAGGCTGCAAATGTGAGGTCACAAATATATATTTTATGGGGCACCATATTGTACGAGCGTTCTGTTGTTGAATATAAGATAGGCTTACCTTCATGGGAGGAATGTTTGGAGGTTGCAGTCGAGAAGTTTGAACTAGCTGGAGCTTCTCCGACAGATATAGGAGTCATGGTAAAGAATCATTGTTCCAATCAAACAGCACTAGAAGGTTTGGGGTTCAAAGTTGACGAGATAGTACAAGCATGGAATGAAATGTATGATGCCCAGAGGTGGCAGTTTGGTGTACCATCATTTCGTCTTGAACCATTGTTCCGGCGGCGTGTTCCCAGACTCCATCACATCTTGGAGCATTTTTGA 2112 0.4266 MGKPTGKKKDPVTQKAANASGKPSKPSERSSKAFDEDTAIFINMSQDLKEEGSRLFQKRDHEGAMLKYEKALKLLPVNHIDVAHLRTNMAACYMQLGLGEYPRAINECNLALEVSPRYSKALLRRAKCYEALNRLDYALRDVNFVLSVEPNNLNALELLGSLKKTMEEKGITIDEKDLASLEQPTTAPMHKVVREKLKKKKSKKSESKAQEKVILEDTVNAVKDKEVVTKTIAKKEVVLKPVKEEKVITRTVKLVFGEDIRWAQLPLNCNMRSVRDIIKDRFPGLKGVLVKYKDQEGDLITITTTDELRLAEPSGDALGSLRLYVTEVNPEEEPIYDGITNGDEMQGDSIEHGSTEAGKDLANKLTNVEDWIIQFARMFKNHVGFDSDSYLDMHEVSMKLYSEALEDVVTSDDAQELFQIAADKFQEMAALALFNWGNVHMSSARRRVSISEDGSMESAYERIKAAYEWARKEYKKAEKRYEEALKIKTDFYEGFLALGHQQFEQAKLCWYYAMACKMNLEDGASSEVLQLYNKAEDCMDRGMLLWEEIEEQRLNGLSKLDKYRAHLEKMGLDGLLEDISSDEAAEQAANVRSQIYILWGTILYERSVVEYKIGLPSWEECLEVAVEKFELAGASPTDIGVMVKNHCSNQTALEGLGFKVDEIVQAWNEMYDAQRWQFGVPSFRLEPLFRRRVPRLHHILEHF 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00785 703 Pfam PB1 domain 249 327 IPR000270 GO:0005515
Accr3g00785 703 ProSiteProfiles TPR repeat profile. 45 78 IPR019734 GO:0005515
Accr3g00785 703 MobiDBLite consensus disorder prediction 1 34 - -
Accr3g00785 703 PANTHER PROTEIN CLMP1 1 702 IPR044517 -
Accr3g00785 703 SMART PB1_new 249 328 IPR000270 GO:0005515
Accr3g00785 703 ProSiteProfiles PB1 domain profile. 249 328 IPR000270 GO:0005515
Accr3g00785 703 Coils Coil 460 487 - -
Accr3g00785 703 CDD PB1 251 326 - -
Accr3g00785 703 SUPERFAMILY CAD & PB1 domains 248 337 - -
Accr3g00785 703 ProSiteProfiles TPR repeat profile. 119 152 IPR019734 GO:0005515
Accr3g00785 703 SUPERFAMILY TPR-like 34 167 IPR011990 GO:0005515
Accr3g00785 703 Gene3D Tetratricopeptide repeat domain 33 172 IPR011990 GO:0005515
Accr3g00785 703 SMART tpr_5 458 491 IPR019734 GO:0005515
Accr3g00785 703 SMART tpr_5 119 152 IPR019734 GO:0005515
Accr3g00785 703 SMART tpr_5 83 118 IPR019734 GO:0005515
Accr3g00785 703 SMART tpr_5 45 78 IPR019734 GO:0005515
Accr3g00785 703 Gene3D - 236 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00785 Accr-Chr3 8697520 8699717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00785 28 152 Calmodulin-binding Proteins AT3G25230 32.117 3.78e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00785 K26538 - qsa:O6P43_015720 1080.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr3g00785 3 8697520 8699717 Accr4g00815 4 7700947 7703188 CCT