Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00738 ATGGGAGAGACTAAGGATGAAGGATATGAGGAAGAGCTTCTTGACTATGAAGAGGAGGAAGACAAGGCGCCCGATTCCGTTGGGACTAAAGTCAACGGTGAAGCGGCCAAGAAGGGATATGTTGGTATACATAGTTCCGGATTCCGAGACTTCCTTTTGAAGCCAGAACTCCTCCGGGCTATTGTGGACTCAGGATTTGAGCATCCATCTGAAGTTCAACATGAGTGCATACCCCAAGCAATCCTTGGAATGGATGTATTATGTCAAGCTAAATCTGGAATGGGGAAAACTGCTGTCTTTGTTCTTTCAACTTTGCAACAAATTGATCCCGTTGCTGGCCAAGTTTCTGCCCTTGTTTTGTGTCATACAAGAGAATTGGCTTACCAGATATGTCATGAGTTTGAGAGGTTCAGCACCTACTTGCCTGACCTCAAGGTTGCTGTTTTCTATGGTGGTGTGAACATTAAAGTTCACAAGGATCTGTTAAAAAATGAGTGCCCTCATATTGTTGTTGGCACTCCTGGAAGAATACTAGCATTAACCCGGGATAAGGACCTTTCTTTAAAGAATGTTAGACATTTCATTTTGGATGAATGTGATAAGATGCTGGAATCACTGGACATGAGGAGAGACGTGCAAGAAATTTTCAAGATGACTCCTCATGATAAGCAAGTCATGATGTTTTCTGCTACACTCAGCAAGGAAATTCGTCCAGTCTGCAAGAAATTTATGCAGGATCCTATGGAAATTTATGTTGATGACGAGGCCAAGTTGACCCTTCATGGACTAGTTCAGCACTACATCAAATTGAAAGAGGAGGAGAAGAACCGCAAGTTGAATGATCTTCTTGATGCACTTGACTTCAATCAAGTAGTCATCTTTGTAAAAAGTGTTAGTAGAGCGGCTGAGCTGGACAAACTGCTTGTGGAGTGCAACTTTCCATCTATATGCATTCATTCGGGCATGTCCCAGGAGGAAAGGTTAAAGCGTTACAAAGGATTCAAAGAGGGGCATGCTCGGATTCTTGTGGCAACAGATCTGGTTGGAAGGGGCATTGACATTGAACGTGTCAACATAGTCATTAACTATGACATGCCTGATTCTGCAGACACATACTTGCACAGGGTTGGCAGAGCAGGAAGGTTTGGCACTAAGGGCCTTGCAATTACATTTGTTTCATGTGCTGCAGATGTTGATGTTCTCAACAATGTTCAATCGAGGTTTGAGGTGGATATAAAACAGCTTCCAGAGTAG 1254 0.4314 MGETKDEGYEEELLDYEEEEDKAPDSVGTKVNGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHARILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCAADVDVLNNVQSRFEVDIKQLPE 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00738 417 CDD DEADc_DDX39 45 252 - -
Accr3g00738 417 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 394 IPR027417 -
Accr3g00738 417 MobiDBLite consensus disorder prediction 1 22 - -
Accr3g00738 417 Gene3D - 259 417 IPR027417 -
Accr3g00738 417 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 46 74 IPR014014 GO:0003724
Accr3g00738 417 MobiDBLite consensus disorder prediction 1 29 - -
Accr3g00738 417 Gene3D - 42 258 IPR027417 -
Accr3g00738 417 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 77 250 IPR014001 -
Accr3g00738 417 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 262 417 IPR001650 -
Accr3g00738 417 FunFam DEAD-box ATP-dependent RNA helicase 259 417 - -
Accr3g00738 417 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 45 401 - -
Accr3g00738 417 SMART helicmild6 302 383 IPR001650 -
Accr3g00738 417 CDD SF2_C_DEAD 263 392 - -
Accr3g00738 417 Pfam DEAD/DEAH box helicase 71 236 IPR011545 GO:0003676|GO:0005524
Accr3g00738 417 FunFam DEAD-box ATP-dependent RNA helicase 56-like 34 252 - -
Accr3g00738 417 SMART ultradead3 65 266 IPR014001 -
Accr3g00738 417 Pfam Helicase conserved C-terminal domain 276 383 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00738 Accr-Chr3 8263770 8271896 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00738 1 417 Eukaryotic Initiation Factors Gene Family AT5G11200 83.007 0.0 737
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00738 K12812 - gmx:100808957 798.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr3g00738 3 8263770 8271896 Accr4g00784 4 7479296 7483514 CCT
Accr3g00738 3 8263770 8271896 Accr3g00738 3 8263770 8271896 ECH
Accr4g00784 4 7479296 7483514 Accr3g00738 3 8263770 8271896 ECH