LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr3g00730	ATGCAGGAGACGGGTCAGGCCGCCACAAGCTCTCTGCCTTCTAGCAGTGAAAGATCATCCAGTTCTGCTCTCCACCTCGATGTTAAAGAAGGACCGGAGAGCGATGAGGAGATCAGAAGGGTACCGGAGTTGGGTGGTGAATCCGCCGGAAAGTCAGTTTCCCGGCCGAACACCTCTGGAGGAGTGGTTCAGGGGAGAAGAGAGAATCAGAGGAAGAGAGGCAGAAACACTGCCGACAAAGAAACCAAGCGCCTCAAGAGGTTGCTGAGGAACAGAGTTTCGGCTCAGCAAGCAAGAGAGAGGAAGAAGGCATACCTGAATGATTTGGAAACAGGGGTAAAAGACTTGGAGAAGAAGAATACGGAACTGGAAGAGAGATTATCAACTTTACAGAACGAGAATCAGATGTTAAGACATATACTGAAGAACACAACTGCAAGCAGAAGAGCAGGCAATGGTGGTGCAAATGAAGGAACTTTATGA	483	0.4907	MQETGQAATSSLPSSSERSSSSALHLDVKEGPESDEEIRRVPELGGESAGKSVSRPNTSGGVVQGRRENQRKRGRNTADKETKRLKRLLRNRVSAQQARERKKAYLNDLETGVKDLEKKNTELEERLSTLQNENQMLRHILKNTTASRRAGNGGANEGTL	160

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr3g00730	160	MobiDBLite	consensus disorder prediction	1	101	-	-
	Accr3g00730	160	SUPERFAMILY	Leucine zipper domain	83	141	IPR046347	GO:0003700\|GO:0006355
	Accr3g00730	160	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	86	101	IPR004827	GO:0003700\|GO:0006355
	Accr3g00730	160	MobiDBLite	consensus disorder prediction	1	22	-	-
	Accr3g00730	160	SMART	brlzneu	79	143	IPR004827	GO:0003700\|GO:0006355
	Accr3g00730	160	FunFam	Transcription factor HY5	102	143	-	-
	Accr3g00730	160	PANTHER	TRANSCRIPTIONAL ACTIVATOR HAC1	3	154	IPR044280	GO:0000981\|GO:0045944
	Accr3g00730	160	Gene3D	Single helix bin	102	143	-	-
	Accr3g00730	160	MobiDBLite	consensus disorder prediction	51	65	-	-
	Accr3g00730	160	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	81	144	IPR004827	GO:0003700\|GO:0006355
	Accr3g00730	160	Pfam	bZIP transcription factor	80	140	IPR004827	GO:0003700\|GO:0006355
	Accr3g00730	160	MobiDBLite	consensus disorder prediction	28	44	-	-
	Accr3g00730	160	CDD	bZIP_HY5-like	84	135	-	-
	Accr3g00730	160	MobiDBLite	consensus disorder prediction	66	101	-	-
	Accr3g00730	160	Coils	Coil	78	140	-	-
	Accr3g00730	160	PRINTS	cAMP response element binding (CREB) protein signature	116	133	-	-
	Accr3g00730	160	PRINTS	cAMP response element binding (CREB) protein signature	9	24	-	-
	Accr3g00730	160	PRINTS	cAMP response element binding (CREB) protein signature	78	94	-	-
	Accr3g00730	160	PRINTS	cAMP response element binding (CREB) protein signature	96	116	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr3g00730	Accr-Chr3	8181854	8182791	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr3g00730	23	140	bZIP Transcription Factor Family	AT5G11260	69.919	8.81e-51	159

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Accr3g00730		bZIP_1	2.9e-14	CL0018

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr3g00730	K16241		-	csav:115711038	213.772