Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00708 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGACGTTTACATACATGATTACTTAGTAAAGAGGGATTTGAAGGCTTCTGCTCAGGCTTTTCAAGCTGAAGGAAAAGTATCATCTGATCCTGTCGCTATTGATGCCCCAGGAGGTTTTCTCTTCGAGTGGTGGTCTGTTTTTTGGGATATATTTATCGCTCGGACCAATGAGAAGCATTCAGAGGTTGCTGCATCTTACATCGAGACACAGTTACTTAAGGGAAGGGAGCAGCAGCAACAGCAGCCACAACCCCAGCAATCACAGCAGCAGCAGCAGCACATGCAGATCCAACAGCTCCTGATGCAGAGGCATGCACAACAACAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGCAACAACAACAACAACAGCCCCAGCAACAGCAGCCCCCACCGCAACAGCAGAGAAGAGACGGGTCTCATCTCTTAAATGGCAGTACAAATGGGATGGTTGAGAATCCAATGATGCGGCAAAACCCTGGTACTGCAAATGCACTGGCCACAAAGATGTATGAGGAGAGGTTAAAACCACCTCTTCAGAGGGATTCTTTGGATGATGCAGCAATGAAGCAAAGGTTTAGTGAGAACATGGGCCAACTCTTGGACCCAAGTCATGCCGCCATATTGAAGTCAGCTGCGGCTTCTGGCCAACCTTCAGGGCAAGTGTTGCATGGTGTTGGTGGTGGAATGTCTCAACAAGTTCAAGCTCGTAGTCCACAATTACCAGGGTCTGCTCCGGATATAAAGAGTGAGATAAATCCTGTTTTAAATCCTAGAGCTGCAGGTCCTGAAGGGTCATTGATAGGAATTCCTGGATCGAATCAAGGTAGCAACAATTTGACGCTCAAGGGGTGGCCACTTAAAGGGTTGGATCAACTACGCTCTGGTCTTCTCCAACCGCCAAAGGCTTTTATGCAGGGCCCTCAACCTTTTCATCAATTTCAGATGTTGTCGCCACAGCATCTTATGCTTGCTCAACAAAATCTTGCATCGCCATCTGCCAGTGATGAAAATAGGCGACTTAGAATGCTTTTGAATAATAGGAATATGGGCCTTAGTAAGGATGGTCTTTCAAACCCCATTGGTGATGTGGTATCAAATGTTGGGTCACCACTTCAAGCTGGCAGCCCTCTTATGCCTCGTGGAGATACAGATATGCTAATGAAGTTAAAATTGGCTCAGTTACATCAACAGCATCAACAGCACAATACCAATCCGCAGCAGATTCAACAGCATGCTCTCTCAAATCAGCAATCTCAGGCTTCAAATCTTACCATGCATCAGCAAGACAAAGTGGGGGGTATTGGAAGTGTCACAGCAGATGGGAGCATGTCAAACTCTTTCAGAGGAAATGATCAGGCTTCCAAAAACCAGACTGGGAGGAAGAGAAAGCAGCCCGTATCTTCTTCTGGTCCTGCCAATAGCTCAGGAACAGCAAATACAACAGGCCCGTCTCCAAGTTCAGCACCCTCAACCCCTTCAACTCATACTCCTGGAGATGTGATATCGATGCCTGCTGTTCCTCGTAATGGTAGTTCTTCAAAGCCTCTTATGATGTTTGGCACTGATGGCGCTGGAACTCTTGCATCACCTTCAAATCAGCTGTGGGATGATAAGGATCTTGAATTGCAGGCTGACATGGATCGATTTGTTGATGATGGATCTCTTGATGACAATGTTGAGTCTTTTTTATCCCATGATGATACGGACCCTAGAGATGCTGTTGGTCGTTGTATGGATATAAGCAAAGGCTTGTTCTCATTTTCCGAAGTCAGTTCTGTACGAGCTAGTACAAGCAAAGTTGTCTGTTGCCACTTCTCATCTGATGGGAAATTGCTCGCAAGTGGTGGCCATGACAAAAAGGCTGTCTTATGGTTCACAGATTCTCTAAAGCAAAAAGCTACTCTTGAAGAACACTCATCTTTAATAACTGATGTCCATTTTAGTCCGAGCATGCCCCGTCTTGCAACATCTTCGTTTGACAAAACTGTCAGGGTTTGGGATGTTGACAATCCTGGATATTCACTTCGCACCTTCACCGGACATTCTGCATCTGTTATGTCACTAGATTTTCATCCTAACAAAGAAGACCTTATCTGCTCTTGTGATGGTGATGGTGAGATTCGATATTGGAGCATAAATAATGGCAGCTGTACCAGAGTCTCTAAGGGTGGCACTGCCCAGATGAGGTTTCAACCGCGCATAGGGAGGTATCTTGCTGCTGCTGCAGAGAACGTTGTCTCTATACTTGATGTGGAAACAAACACATGCCAATATTCATTACAGGGGCATACAAAGCCAATACATTCTGTTTGCTGGGACCCTTCTGGGGAGTTGCTTGCATCAGTCAGTGAGGACTCTGTCAGGGTTTGGACTCTTGGATCAGGAAGTGAAGGGGAATGTGTCCATGAGCTGAGCTGTAATGGGAATAAGTTTCATTCTTGTGTTTTCCACCCGACGTATTTTTCATTGCTGGTCGTTGGATGTTACCAGTCTTTGGAGCTTTGGAACATGGCTGAGCACAAGACAATGACTCTTTCAGCTCATGAAGGATTAATTGCTTCCTTGGCTGTCTCAAATGTAACTGGTTTGGTTGCTTCAGCCAGTCATGACAAGTTTGTAAAGCTTTGGAAGTAA 2673 0.4575 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLLKGREQQQQQPQPQQSQQQQQHMQIQQLLMQRHAQQQQQQQQQQQQQQQQQQQPQQQQPPPQQQRRDGSHLLNGSTNGMVENPMMRQNPGTANALATKMYEERLKPPLQRDSLDDAAMKQRFSENMGQLLDPSHAAILKSAAASGQPSGQVLHGVGGGMSQQVQARSPQLPGSAPDIKSEINPVLNPRAAGPEGSLIGIPGSNQGSNNLTLKGWPLKGLDQLRSGLLQPPKAFMQGPQPFHQFQMLSPQHLMLAQQNLASPSASDENRRLRMLLNNRNMGLSKDGLSNPIGDVVSNVGSPLQAGSPLMPRGDTDMLMKLKLAQLHQQHQQHNTNPQQIQQHALSNQQSQASNLTMHQQDKVGGIGSVTADGSMSNSFRGNDQASKNQTGRKRKQPVSSSGPANSSGTANTTGPSPSSAPSTPSTHTPGDVISMPAVPRNGSSSKPLMMFGTDGAGTLASPSNQLWDDKDLELQADMDRFVDDGSLDDNVESFLSHDDTDPRDAVGRCMDISKGLFSFSEVSSVRASTSKVVCCHFSSDGKLLASGGHDKKAVLWFTDSLKQKATLEEHSSLITDVHFSPSMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSASVMSLDFHPNKEDLICSCDGDGEIRYWSINNGSCTRVSKGGTAQMRFQPRIGRYLAAAAENVVSILDVETNTCQYSLQGHTKPIHSVCWDPSGELLASVSEDSVRVWTLGSGSEGECVHELSCNGNKFHSCVFHPTYFSLLVVGCYQSLELWNMAEHKTMTLSAHEGLIASLAVSNVTGLVASASHDKFVKLWK 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00708 890 Gene3D - 584 739 IPR015943 GO:0005515
Accr3g00708 890 SUPERFAMILY WD40 repeat-like 599 890 IPR036322 GO:0005515
Accr3g00708 890 MobiDBLite consensus disorder prediction 238 252 - -
Accr3g00708 890 CDD WD40 602 890 - -
Accr3g00708 890 Pfam WD domain, G-beta repeat 768 803 IPR001680 GO:0005515
Accr3g00708 890 Pfam WD domain, G-beta repeat 855 890 IPR001680 GO:0005515
Accr3g00708 890 Pfam WD domain, G-beta repeat 687 724 IPR001680 GO:0005515
Accr3g00708 890 Pfam WD domain, G-beta repeat 645 680 IPR001680 GO:0005515
Accr3g00708 890 Pfam WD domain, G-beta repeat 605 637 IPR001680 GO:0005515
Accr3g00708 890 ProSiteProfiles Trp-Asp (WD) repeats profile. 858 890 IPR001680 GO:0005515
Accr3g00708 890 ProSiteProfiles Trp-Asp (WD) repeats profile. 691 733 IPR001680 GO:0005515
Accr3g00708 890 SMART WD40_4 810 849 IPR001680 GO:0005515
Accr3g00708 890 SMART WD40_4 851 890 IPR001680 GO:0005515
Accr3g00708 890 SMART WD40_4 684 724 IPR001680 GO:0005515
Accr3g00708 890 SMART WD40_4 641 680 IPR001680 GO:0005515
Accr3g00708 890 SMART WD40_4 766 804 IPR001680 GO:0005515
Accr3g00708 890 SMART WD40_4 599 638 IPR001680 GO:0005515
Accr3g00708 890 MobiDBLite consensus disorder prediction 407 444 - -
Accr3g00708 890 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 890 - -
Accr3g00708 890 MobiDBLite consensus disorder prediction 407 527 - -
Accr3g00708 890 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 858 890 - -
Accr3g00708 890 SMART Lish 8 40 IPR006594 GO:0005515
Accr3g00708 890 ProSiteProfiles Trp-Asp (WD) repeats profile. 648 683 IPR001680 GO:0005515
Accr3g00708 890 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 691 729 - -
Accr3g00708 890 MobiDBLite consensus disorder prediction 229 287 - -
Accr3g00708 890 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 648 683 - -
Accr3g00708 890 MobiDBLite consensus disorder prediction 451 511 - -
Accr3g00708 890 Coils Coil 108 136 - -
Accr3g00708 890 ProSitePatterns Trp-Asp (WD) repeats signature. 667 681 IPR019775 -
Accr3g00708 890 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Accr3g00708 890 ProSiteProfiles Trp-Asp (WD) repeats profile. 606 637 IPR001680 GO:0005515
Accr3g00708 890 MobiDBLite consensus disorder prediction 87 170 - -
Accr3g00708 890 Pfam LisH 10 36 IPR006594 GO:0005515
Accr3g00708 890 Gene3D - 740 890 IPR015943 GO:0005515
Accr3g00708 890 ProSiteProfiles Trp-Asp (WD) repeats profile. 773 813 IPR001680 GO:0005515
Accr3g00708 890 FunFam Transcriptional corepressor LEUNIG 734 890 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00708 Accr-Chr3 7940751 7948650 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00708 685 889 Miscellaneous Gene Families AT5G08390 25.714 2.74e-12 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Accr3g00708 WD40 0.11 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00708 - - twl:119996625 1398.65