Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00707 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGACGTTTACATACATGATTACTTAGTAAAGAGGGATTTGAAGGCTTCTGCTCAGGCTTTTCAAGCTGAAGGAAAAGTATCATCTGATCCTGTCGCTATTGATGCCCCAGGAGGTTTTCTCTTCGAGTGGTGGTCTGTTTTTTGGGATATATTTATCGCTCGGACCAATGAGAAGCATTCAGAGGTTGCTGCATCTTACATCGAGACACAGTTACTTAAGGGAAGGGAGCAGCAGCAACAGCAGCCACAACCCCAGCAATCACAGCAGCAGCAGCAGCACATGCAGATCCAACAGCTCCTGATGCAGAGGCATGCACAACAACAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGCAACAACAACAACAACAGCCCCAGCAACAGCAGCCCCCACCGCAACAGCAGAGAAGAGACGGGTCTCATCTCTTAAATGGCAGTACAAATGGGATGGTTGAGAATCCAATGATGCGGCAAAACCCTGGTACTGCAAATGCACTGGCCACAAAGATGTATGAGGAGAGGTTAAAACCACCTCTTCAGAGGGATTCTTTGGATGATGCAGCAATGAAGCAAAGGTTTAGTGAGAACATGGGCCAACTCTTGGACCCAAGTCATGCCGCCATATTGAAGTCAGCTGCGGCTTCTGGCCAACCTTCAGGGCAAGTGTTGCATGGTGTTGGTGGTGGAATGTCTCAACAAGTTCAAGCTCGTAGTCCACAATTACCAGGGTCTGCTCCGGATATAAAGAGTGAGATAAATCCTGTTTTAAATCCTAGAGCTGCAGGTCCTGAAGGGTCATTGATAGGAATTCCTGGATCGAATCAAGGTAGCAACAATTTGACGCTCAAGGGGTGGCCACTTAAAGGGTTGGATCAACTACGCTCTGGTCTTCTCCAACCGCCAAAGGCTTTTATGCAGGGCCCTCAACCTTTTCATCAATTTCAGATGTTGTCGCCACAGCATCTTATGCTTGCTCAACAAAATCTTGCATCGCCATCTGCCAGTGATGAAAATAGGCGACTTAGAATGCTTTTGAATAATAGGAATATGGGCCTTAGTAAGGATGGTCTTTCAAACCCCATTGGTGATGTGGTATCAAATGTTGGGTCACCACTTCAAGCTGGCAGCCCTCTTATGCCTCGTGGAGATACAGATATGCTAATGAAGTTAAAATTGGCTCAGTTACATCAACAGCATCAACAGCACAATACCAATCCGCAGCAGATTCAACAGCATGCTCTCTCAAATCAGCAATCTCAGGCTTCAAATCTTACCATGCATCAGCAAGACAAAGTGGGGGGTATTGGAAGTGTCACAGCAGATGGGAGCATGTCAAACTCTTTCAGAGGAAATGATCAGGCTTCCAAAAACCAGACTGGGAGGAAGAGAAAGCAGCCCGTATCTTCTTCTGGTCCTGCCAATAGCTCAGGAACAGCAAATACAACAGGCCCGTCTCCAAGTTCAGCACCCTCAACCCCTTCAACTCATACTCCTGGAGATGTGATATCGATGCCTGCTGTTCCTCGTAATGGTAGTTCTTCAAAGCCTCTTATGATGTTTGGCACTGATGGCGCTGGAACTCTTGCATCACCTTCAAATCAGCTGGCTGACATGGATCGATTTGTTGATGATGGATCTCTTGATGACAATGTTGAGTCTTTTTTATCCCATGATGATACGGACCCTAGAGATGCTGTTGGTCGTTGTATGGATATAAGCAAAGGCTTGTTCTCATTTTCCGAAGTCAGTTCTGTACGAGCTAGTACAAGCAAAGTTGTCTGTTGCCACTTCTCATCTGATGGGAAATTGCTCGCAAGTGGTGGCCATGACAAAAAGGCTGTCTTATGGTTCACAGATTCTCTAAAGCAAAAAGCTACTCTTGAAGAACACTCATCTTTAATAACTGATGTCCATTTTAGTCCGAGCATGCCCCGTCTTGCAACATCTTCGTTTGACAAAACTGTCAGGGTTTGGGATGTTGACAATCCTGGATATTCACTTCGCACCTTCACCGGACATTCTGCATCTGTTATGTCACTAGATTTTCATCCTAACAAAGAAGACCTTATCTGCTCTTGTGATGGTGATGGTGAGATTCGATATTGGAGCATAAATAATGGCAGCTGTACCAGAGTCTCTAAGGGTGGCACTGCCCAGATGAGGTTTCAACCGCGCATAGGGAGGTATCTTGCTGCTGCTGCAGAGAACGTTGTCTCTATACTTGATGTGGAAACAAACACATGCCAATATTCATTACAGGGGCATACAAAGCCAATACATTCTGTTTGCTGGGACCCTTCTGGGGAGTTGCTTGCATCAGTCAGTGAGGACTCTGTCAGGGTTTGGACTCTTGGATCAGGAAGTGAAGGGGAATGTGTCCATGAGCTGAGCTGTAATGGGAATAAGTTTCATTCTTGTGTTTTCCACCCGACGTATTTTTCATTGCTGGTCGTTGGATGTTACCAGTCTTTGGAGCTTTGGAACATGGCTGAGCACAAGACAATGACTCTTTCAGCTCATGAAGGATTAATTGCTTCCTTGGCTGTCTCAAATGTAACTGGTTTGGTTGCTTCAGCCAGTCATGACAAGTTTGTAAAGCTTTGGAAGTAA 2646 0.458 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLLKGREQQQQQPQPQQSQQQQQHMQIQQLLMQRHAQQQQQQQQQQQQQQQQQQQPQQQQPPPQQQRRDGSHLLNGSTNGMVENPMMRQNPGTANALATKMYEERLKPPLQRDSLDDAAMKQRFSENMGQLLDPSHAAILKSAAASGQPSGQVLHGVGGGMSQQVQARSPQLPGSAPDIKSEINPVLNPRAAGPEGSLIGIPGSNQGSNNLTLKGWPLKGLDQLRSGLLQPPKAFMQGPQPFHQFQMLSPQHLMLAQQNLASPSASDENRRLRMLLNNRNMGLSKDGLSNPIGDVVSNVGSPLQAGSPLMPRGDTDMLMKLKLAQLHQQHQQHNTNPQQIQQHALSNQQSQASNLTMHQQDKVGGIGSVTADGSMSNSFRGNDQASKNQTGRKRKQPVSSSGPANSSGTANTTGPSPSSAPSTPSTHTPGDVISMPAVPRNGSSSKPLMMFGTDGAGTLASPSNQLADMDRFVDDGSLDDNVESFLSHDDTDPRDAVGRCMDISKGLFSFSEVSSVRASTSKVVCCHFSSDGKLLASGGHDKKAVLWFTDSLKQKATLEEHSSLITDVHFSPSMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSASVMSLDFHPNKEDLICSCDGDGEIRYWSINNGSCTRVSKGGTAQMRFQPRIGRYLAAAAENVVSILDVETNTCQYSLQGHTKPIHSVCWDPSGELLASVSEDSVRVWTLGSGSEGECVHELSCNGNKFHSCVFHPTYFSLLVVGCYQSLELWNMAEHKTMTLSAHEGLIASLAVSNVTGLVASASHDKFVKLWK 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00707 881 Gene3D - 575 730 IPR015943 GO:0005515
Accr3g00707 881 MobiDBLite consensus disorder prediction 238 252 - -
Accr3g00707 881 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 881 - -
Accr3g00707 881 CDD WD40 593 881 - -
Accr3g00707 881 MobiDBLite consensus disorder prediction 407 444 - -
Accr3g00707 881 SUPERFAMILY WD40 repeat-like 590 881 IPR036322 GO:0005515
Accr3g00707 881 Gene3D - 731 881 IPR015943 GO:0005515
Accr3g00707 881 MobiDBLite consensus disorder prediction 407 527 - -
Accr3g00707 881 ProSiteProfiles Trp-Asp (WD) repeats profile. 639 674 IPR001680 GO:0005515
Accr3g00707 881 SMART WD40_4 757 795 IPR001680 GO:0005515
Accr3g00707 881 SMART WD40_4 675 715 IPR001680 GO:0005515
Accr3g00707 881 SMART WD40_4 801 840 IPR001680 GO:0005515
Accr3g00707 881 SMART WD40_4 842 881 IPR001680 GO:0005515
Accr3g00707 881 SMART WD40_4 632 671 IPR001680 GO:0005515
Accr3g00707 881 SMART WD40_4 590 629 IPR001680 GO:0005515
Accr3g00707 881 SMART Lish 8 40 IPR006594 GO:0005515
Accr3g00707 881 MobiDBLite consensus disorder prediction 229 287 - -
Accr3g00707 881 ProSiteProfiles Trp-Asp (WD) repeats profile. 764 804 IPR001680 GO:0005515
Accr3g00707 881 ProSiteProfiles Trp-Asp (WD) repeats profile. 682 724 IPR001680 GO:0005515
Accr3g00707 881 ProSitePatterns Trp-Asp (WD) repeats signature. 658 672 IPR019775 -
Accr3g00707 881 MobiDBLite consensus disorder prediction 451 511 - -
Accr3g00707 881 Coils Coil 108 136 - -
Accr3g00707 881 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 639 674 - -
Accr3g00707 881 Pfam WD domain, G-beta repeat 596 628 IPR001680 GO:0005515
Accr3g00707 881 Pfam WD domain, G-beta repeat 636 671 IPR001680 GO:0005515
Accr3g00707 881 Pfam WD domain, G-beta repeat 846 881 IPR001680 GO:0005515
Accr3g00707 881 Pfam WD domain, G-beta repeat 759 794 IPR001680 GO:0005515
Accr3g00707 881 Pfam WD domain, G-beta repeat 678 715 IPR001680 GO:0005515
Accr3g00707 881 ProSiteProfiles Trp-Asp (WD) repeats profile. 849 881 IPR001680 GO:0005515
Accr3g00707 881 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Accr3g00707 881 Pfam LisH 10 36 IPR006594 GO:0005515
Accr3g00707 881 MobiDBLite consensus disorder prediction 87 170 - -
Accr3g00707 881 ProSiteProfiles Trp-Asp (WD) repeats profile. 597 628 IPR001680 GO:0005515
Accr3g00707 881 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 849 881 - -
Accr3g00707 881 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 682 720 - -
Accr3g00707 881 FunFam Transcriptional corepressor LEUNIG 725 881 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00707 Accr-Chr3 7940751 7948650 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00707 676 880 Miscellaneous Gene Families AT5G08390 25.714 2.17e-12 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Accr3g00707 WD40 0.1 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00707 - - twl:119996625 1373.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr3g00707 3 7940751 7948650 Accr4g00753 4 7232304 7252605 CCT