Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00706 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGACGTTTACATACATGATTACTTAGTAAAGAGGGATTTGAAGGCTTCTGCTCAGGCTTTTCAAGCTGAAGGAAAAGTATCATCTGATCCTGTCGCTATTGATGCCCCAGGAGGTTTTCTCTTCGAGTGGTGGTCTGTTTTTTGGGATATATTTATCGCTCGGACCAATGAGAAGCATTCAGAGGTTGCTGCATCTTACATCGAGACACAGTTACTTAAGGGAAGGGAGCAGCAGCAACAGCAGCCACAACCCCAGCAATCACAGCAGCAGCAGCAGCACATGCAGATCCAACAGCTCCTGATGCAGAGGCATGCACAACAACAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGCAACAACAACAACAACAGCCCCAGCAACAGCAGCCCCCACCGCAACAGCAGAGAAGAGACGGGTCTCATCTCTTAAATGGCAGTACAAATGGGATGGTTGAGAATCCAATGATGCGGCAAAACCCTGGTACTGCAAATGCACTGGCCACAAAGATGTATGAGGAGAGGTTAAAACCACCTCTTCAGAGGGATTCTTTGGATGATGCAGCAATGAAGCAAAGGTTTAGTGAGAACATGGGCCAACTCTTGGACCCAAGTCATGCCGCCATATTGAAGTCAGCTGCGGCTTCTGGCCAACCTTCAGGGCAAGTGTTGCATGGTGTTGGTGGTGGAATGTCTCAACAAGTTCAAGCTCGTAGTCCACAATTACCAGGGTCTGCTCCGGATATAAAGAGTGAGATAAATCCTGTTTTAAATCCTAGAGCTGCAGGTCCTGAAGGGTCATTGATAGGAATTCCTGGATCGAATCAAGGTAGCAACAATTTGACGCTCAAGGGGTGGCCACTTAAATTAAAATTGGCTCAGTTACATCAACAGCATCAACAGCACAATACCAATCCGCAGCAGATTCAACAGCATGCTCTCTCAAATCAGCAATCTCAGGCTTCAAATCTTACCATGCATCAGCAAGACAAAGTGGGGGGTATTGGAAGTGTCACAGCAGATGGGAGCATGTCAAACTCTTTCAGAGGAAATGATCAGGCTTCCAAAAACCAGACTGGGAGGAAGAGAAAGCAGCCCGTATCTTCTTCTGGTCCTGCCAATAGCTCAGGAACAGCAAATACAACAGGCCCGTCTCCAAGTTCAGCACCCTCAACCCCTTCAACTCATACTCCTGGAGATGTGATATCGATGCCTGCTGTTCCTCGTAATGGTAGTTCTTCAAAGCCTCTTATGATGTTTGGCACTGATGGCGCTGGAACTCTTGCATCACCTTCAAATCAGCTGTGGGATGATAAGGATCTTGAATTGCAGGCTGACATGGATCGATTTGTTGATGATGGATCTCTTGATGACAATGTTGAGTCTTTTTTATCCCATGATGATACGGACCCTAGAGATGCTGTTGGTCGTTGTATGGATATAAGCAAAGGCTTGTTCTCATTTTCCGAAGTCAGTTCTGTACGAGCTAGTACAAGCAAAGTTGTCTGTTGCCACTTCTCATCTGATGGGAAATTGCTCGCAAGTGGTGGCCATGACAAAAAGGCTGTCTTATGGTTCACAGATTCTCTAAAGCAAAAAGCTACTCTTGAAGAACACTCATCTTTAATAACTGATGTCCATTTTAGTCCGAGCATGCCCCGTCTTGCAACATCTTCGTTTGACAAAACTGTCAGGGTTTGGGATGTTGACAATCCTGGATATTCACTTCGCACCTTCACCGGACATTCTGCATCTGTTATGTCACTAGATTTTCATCCTAACAAAGAAGACCTTATCTGCTCTTGTGATGGTGATGGTGAGATTCGATATTGGAGCATAAATAATGGCAGCTGTACCAGAGTCTCTAAGGGTGGCACTGCCCAGATGAGGTTTCAACCGCGCATAGGGAGGTATCTTGCTGCTGCTGCAGAGAACGTTGTCTCTATACTTGATGTGGAAACAAACACATGCCAATATTCATTACAGGGGCATACAAAGCCAATACATTCTGTTTGCTGGGACCCTTCTGGGGAGTTGCTTGCATCAGTCAGTGAGGACTCTGTCAGGGTTTGGACTCTTGGATCAGGAAGTGAAGGGGAATGTGTCCATGAGCTGAGCTGTAATGGGAATAAGTTTCATTCTTGTGTTTTCCACCCGACGTATTTTTCATTGCTGGTCGTTGGATGTTACCAGTCTTTGGAGCTTTGGAACATGGCTGAGCACAAGACAATGACTCTTTCAGCTCATGAAGGATTAATTGCTTCCTTGGCTGTCTCAAATGTAACTGGTTTGGTTGCTTCAGCCAGTCATGACAAGTTTGTAAAGCTTTGGAAGTAA 2370 0.4582 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLLKGREQQQQQPQPQQSQQQQQHMQIQQLLMQRHAQQQQQQQQQQQQQQQQQQQPQQQQPPPQQQRRDGSHLLNGSTNGMVENPMMRQNPGTANALATKMYEERLKPPLQRDSLDDAAMKQRFSENMGQLLDPSHAAILKSAAASGQPSGQVLHGVGGGMSQQVQARSPQLPGSAPDIKSEINPVLNPRAAGPEGSLIGIPGSNQGSNNLTLKGWPLKLKLAQLHQQHQQHNTNPQQIQQHALSNQQSQASNLTMHQQDKVGGIGSVTADGSMSNSFRGNDQASKNQTGRKRKQPVSSSGPANSSGTANTTGPSPSSAPSTPSTHTPGDVISMPAVPRNGSSSKPLMMFGTDGAGTLASPSNQLWDDKDLELQADMDRFVDDGSLDDNVESFLSHDDTDPRDAVGRCMDISKGLFSFSEVSSVRASTSKVVCCHFSSDGKLLASGGHDKKAVLWFTDSLKQKATLEEHSSLITDVHFSPSMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSASVMSLDFHPNKEDLICSCDGDGEIRYWSINNGSCTRVSKGGTAQMRFQPRIGRYLAAAAENVVSILDVETNTCQYSLQGHTKPIHSVCWDPSGELLASVSEDSVRVWTLGSGSEGECVHELSCNGNKFHSCVFHPTYFSLLVVGCYQSLELWNMAEHKTMTLSAHEGLIASLAVSNVTGLVASASHDKFVKLWK 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00706 789 PANTHER TRANSCRIPTION ACTIVATOR MSS11 304 789 - -
Accr3g00706 789 MobiDBLite consensus disorder prediction 229 284 - -
Accr3g00706 789 MobiDBLite consensus disorder prediction 238 252 - -
Accr3g00706 789 ProSiteProfiles Trp-Asp (WD) repeats profile. 672 712 IPR001680 GO:0005515
Accr3g00706 789 SMART WD40_4 709 748 IPR001680 GO:0005515
Accr3g00706 789 SMART WD40_4 750 789 IPR001680 GO:0005515
Accr3g00706 789 SMART WD40_4 583 623 IPR001680 GO:0005515
Accr3g00706 789 SMART WD40_4 540 579 IPR001680 GO:0005515
Accr3g00706 789 SMART WD40_4 665 703 IPR001680 GO:0005515
Accr3g00706 789 SMART WD40_4 498 537 IPR001680 GO:0005515
Accr3g00706 789 ProSiteProfiles Trp-Asp (WD) repeats profile. 590 632 IPR001680 GO:0005515
Accr3g00706 789 MobiDBLite consensus disorder prediction 306 444 - -
Accr3g00706 789 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 547 582 - -
Accr3g00706 789 SUPERFAMILY WD40 repeat-like 498 789 IPR036322 GO:0005515
Accr3g00706 789 ProSiteProfiles Trp-Asp (WD) repeats profile. 757 789 IPR001680 GO:0005515
Accr3g00706 789 Gene3D - 483 638 IPR015943 GO:0005515
Accr3g00706 789 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 757 789 - -
Accr3g00706 789 ProSiteProfiles Trp-Asp (WD) repeats profile. 505 536 IPR001680 GO:0005515
Accr3g00706 789 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 590 628 - -
Accr3g00706 789 MobiDBLite consensus disorder prediction 350 410 - -
Accr3g00706 789 ProSitePatterns Trp-Asp (WD) repeats signature. 566 580 IPR019775 -
Accr3g00706 789 SMART Lish 8 40 IPR006594 GO:0005515
Accr3g00706 789 Pfam LisH 10 36 IPR006594 GO:0005515
Accr3g00706 789 FunFam Transcriptional corepressor LEUNIG 633 789 - -
Accr3g00706 789 MobiDBLite consensus disorder prediction 306 343 - -
Accr3g00706 789 Coils Coil 108 136 - -
Accr3g00706 789 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Accr3g00706 789 Pfam WD domain, G-beta repeat 754 789 IPR001680 GO:0005515
Accr3g00706 789 Pfam WD domain, G-beta repeat 504 536 IPR001680 GO:0005515
Accr3g00706 789 Pfam WD domain, G-beta repeat 586 623 IPR001680 GO:0005515
Accr3g00706 789 Pfam WD domain, G-beta repeat 667 702 IPR001680 GO:0005515
Accr3g00706 789 Pfam WD domain, G-beta repeat 544 579 IPR001680 GO:0005515
Accr3g00706 789 Gene3D - 639 789 IPR015943 GO:0005515
Accr3g00706 789 MobiDBLite consensus disorder prediction 87 170 - -
Accr3g00706 789 CDD WD40 501 789 - -
Accr3g00706 789 ProSiteProfiles Trp-Asp (WD) repeats profile. 547 582 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00706 Accr-Chr3 7940751 7948650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00706 584 788 Miscellaneous Gene Families AT5G08390 25.714 2.81e-12 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Accr3g00706 WD40 0.092 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00706 - - aip:107605121 851.277