Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00644 ATGCAACAGAGGCTCAAGCTTCAGCAACAGCAAGCCCTCATGCAGCAAGCGTTGCTTCAGCAACAGCAGATGTATCATCCAGGAATGCTAGCCGCTCCTATGTCCCAGATTGAGCCTATTCCAAGTGGAAATTTGCCTCCAGGCTTTGACACTTCTACTTGCCGCAGCATTTATGTAGGAAACATTCATGTAAATGTCACTGAAAAACTTCTTGCTGAACTCTTTCAAAGTGTTGGCCCTCTTGCTGGCTGCAAGCTCATAAGGAAAGAAAAGTCGTCATATGGTTTTGTGGATTACCTTGATAGAGCATCTGCAGCCCTTGCAATAATGAATTTGCATGGACGTCAACTTTATGGTCAGGCAATTAAGGTGAATTGGGCATATGCCAATACCCATAGGGAGGATACTTCAGGGCACTTCAATATATTTGTTGGTGATTTGAGTCCAGAGGTTACTGATGCAACTTTATTTGCATGCTTCTCAGTCTATCCTAGTTGTTCTGATGCAAAGGTCATGTGGGATCTCAAAACTGGTCGGTCAAAAGGATATGGTTTTGTTTCTTTCCGTGATCAGCAGGATGCTCAAAATGCCATCAATGATATGAATGGTAAGTGGCTGGGAAATAGGCAAATACGATGCAACTGGGGAACCAAGGGCGCTGGTACAAGTACTAATGAGGAGAAGAACAATGACACCCAAAATGCTGTTGTCCTAACAAATGGGTCTTCAGATGGAGGTCAGGAATATCATAATGAGGATGCTCCTGAAAATGGTTCTGCCTATACCACCGTTTATGTTGGCAACCTTCCCCTTGATGTAACACAAAATGAACTCCACTATCAGTTCCATGCATTGGGGGCTGGAGTGATTGAGGAGGTCCGAGTTCAAAGGGATAAAGGTTTTGGATTTGTAAGATACAACACTCATGAAGAAGCAGAGTTGGCCATTCAGATGGCTAATGGAAGAATACTTCGTGGAAAAACAATGAAGTGTTCATGGGGTAACAAGCCAACACCTCCTGGAACAGCTTCAAACCCACTACCTCCTCCTACACAACCTTATCAAATGCTTGCCACAAACCAAGGCTATTCTCCAGCTGAGTTAATAGCTTATCAGCGCCAACTGGCCTTAAGTCAGGCTGCTGTATCTGGCCTTTCAGGTCAAGCTCTTGTGCATATGACTGGTCAACATAGCCTTGCTGCTGCCTCCCTTGGCTTAAACTCTGGGGCATCCCAAGCCATGTATGATGCCTATTCTGGTAATTCTTCAAGGCAGCACCTCATGTACTATCGTTAA 1296 0.446 MQQRLKLQQQQALMQQALLQQQQMYHPGMLAAPMSQIEPIPSGNLPPGFDTSTCRSIYVGNIHVNVTEKLLAELFQSVGPLAGCKLIRKEKSSYGFVDYLDRASAALAIMNLHGRQLYGQAIKVNWAYANTHREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAKVMWDLKTGRSKGYGFVSFRDQQDAQNAINDMNGKWLGNRQIRCNWGTKGAGTSTNEEKNNDTQNAVVLTNGSSDGGQEYHNEDAPENGSAYTTVYVGNLPLDVTQNELHYQFHALGAGVIEEVRVQRDKGFGFVRYNTHEEAELAIQMANGRILRGKTMKCSWGNKPTPPGTASNPLPPPTQPYQMLATNQGYSPAELIAYQRQLALSQAAVSGLSGQALVHMTGQHSLAAASLGLNSGASQAMYDAYSGNSSRQHLMYYR 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00644 431 SUPERFAMILY RNA-binding domain, RBD 253 345 IPR035979 GO:0003676
Accr3g00644 431 Gene3D - 1 137 IPR012677 -
Accr3g00644 431 Gene3D - 239 340 IPR012677 -
Accr3g00644 431 SUPERFAMILY RNA-binding domain, RBD 134 223 IPR035979 GO:0003676
Accr3g00644 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 218 IPR000504 GO:0003723
Accr3g00644 431 FunFam Nucleolysin TIAR-like protein 139 237 - -
Accr3g00644 431 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 46 339 - -
Accr3g00644 431 SUPERFAMILY RNA-binding domain, RBD 39 133 IPR035979 GO:0003676
Accr3g00644 431 FunFam Oligouridylate-binding protein 1C 239 340 - -
Accr3g00644 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 262 336 IPR000504 GO:0003723
Accr3g00644 431 CDD RRM2_PUB1 139 218 - -
Accr3g00644 431 SMART rrm2_1 141 214 IPR003954 GO:0003676
Accr3g00644 431 SMART rrm2_1 263 332 IPR003954 GO:0003676
Accr3g00644 431 Gene3D - 138 238 IPR012677 -
Accr3g00644 431 FunFam Nucleolysin TIAR-like protein 1 138 - -
Accr3g00644 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 129 IPR000504 GO:0003723
Accr3g00644 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 264 330 IPR000504 GO:0003723
Accr3g00644 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 212 IPR000504 GO:0003723
Accr3g00644 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 123 IPR000504 GO:0003723
Accr3g00644 431 SMART rrm1_1 141 214 IPR000504 GO:0003723
Accr3g00644 431 SMART rrm1_1 56 125 IPR000504 GO:0003723
Accr3g00644 431 SMART rrm1_1 263 332 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00644 Accr-Chr3 7188229 7193908 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00644 47 336 Eukaryotic Initiation Factors Gene Family AT4G34110 25.914 1.43e-22 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00644 K13201 - gmx:100777108 747.658