Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00622 ATGGAAGGAAGTGGAGGAGGGACGTCAAAGGAGGAAACCCTACCTCCTGGCTTTCGATTTCATCCCACAGATGAAGAACTCATCACCAGCTATCTCATCAACAAGATCTCTGATTCTGCGTTCTCCGCTCGAGCTATCACCGACGTAGATCTCAACAAATGCGAGCCATGGGAGCTCCCTGGGAAGGCGAAGATGGGAGAGAAAGAGTGGTACTTTTTCAGTCTGAGGGATAGGAAATACCCGACGGGGGTGAGAACGAACAGGGCGACAAACACAGGCTACTGGAAGACCACCGGGAAAGACAAGGAAATCCTCAACAGTGCAACATCGGAGTTGGTTGGCATGAAAAAGACTTTGGTTTTCTACAAAGGCAGAGCTCCAAGAGGTGAAAAATCCAACTGGGTCATGCACGAATACCGTATCCACTCCAAATCCTCCTTCCGACTACACAAGCAGGATGAATGGGTGGTATGCAGAGTGTTCCAGAAGAGTGGAGGAGCCAAAAAGTACCCATCGAATAACACAAGAGGGGTGAATCCATATAGCCTGGAAATAGGTCCTAACATGGTGGCACCTTCAATGATGCATCATGTGGCGGATCCAAATTCTGCTCACTTCCTCTACGGAAGGAACTTTGTCAACACTGCTTCTGACCTTGCAGAGGTTGCTAGGGTTTTGAGAGCCGGAGGGGCTGCCTCCACCACCGCTGCTTTCAATTTACCAATGCAAACCCATGCTCCGCTAAACTATCCCGCCACAGCCCCCGGAGGATTTACCATTTCCGGCCTCAACTTGAATCTCGCCGGAGGAGGAGCAGCGGCAACTTCCGGGCAACCTGTTTACAGGCAGATGAACCCTCATGATGTGGGCCCCAACATGATGACAGCTGGCAGTTCTCTGAATGTATCAGATAGTGTAGGGTATGGTGCTACAGAAATGAGCAACCCTAATAATAATATTGGTCCGAGCAACAGGTTCATTGGGATGGACCATTGTGTGGATTTAGATAACTACTGGCCTTCCTACTAA 1029 0.4966 MEGSGGGTSKEETLPPGFRFHPTDEELITSYLINKISDSAFSARAITDVDLNKCEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEILNSATSELVGMKKTLVFYKGRAPRGEKSNWVMHEYRIHSKSSFRLHKQDEWVVCRVFQKSGGAKKYPSNNTRGVNPYSLEIGPNMVAPSMMHHVADPNSAHFLYGRNFVNTASDLAEVARVLRAGGAASTTAAFNLPMQTHAPLNYPATAPGGFTISGLNLNLAGGGAAATSGQPVYRQMNPHDVGPNMMTAGSSLNVSDSVGYGATEMSNPNNNIGPSNRFIGMDHCVDLDNYWPSY 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00622 342 ProSiteProfiles NAC domain profile. 14 163 IPR003441 GO:0003677|GO:0006355
Accr3g00622 342 SUPERFAMILY NAC domain 12 163 IPR036093 GO:0003677|GO:0006355
Accr3g00622 342 Gene3D NAC domain 23 166 IPR036093 GO:0003677|GO:0006355
Accr3g00622 342 FunFam NAC domain-containing protein 100-like 23 167 - -
Accr3g00622 342 Pfam No apical meristem (NAM) protein 15 141 IPR003441 GO:0003677|GO:0006355
Accr3g00622 342 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 11 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00622 Accr-Chr3 6994684 6996406 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00622 10 342 NAC Transcription Factor Family AT2G24430 51.275 5.42e-107 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Accr3g00622 NAM 2.4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00622 - - lja:Lj1g3v2035130.1 466.463