Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00621 ATGAAAGATCAAGATCCTAATTATAAAGCATCAAAAACCCACTTGAACAAGAGTTTGCACTCCATGCAACAGAAAGAGAAGGAAGCGATTAGGAAAGAAGGGAGGGATAAGGAAATGGAAGGAAGTGGAGGAGGGACGTCAAAGGAGGAAACCCTACCTCCTGGCTTTCGATTTCATCCCACAGATGAAGAACTCATCACCAGCTATCTCATCAACAAGATCTCTGATTCTGCGTTCTCCGCTCGAGCTATCACCGACGTAGATCTCAACAAATGCGAGCCATGGGAGCTCCCTGGGAAGGCGAAGATGGGAGAGAAAGAGTGGTACTTTTTCAGTCTGAGGGATAGGAAATACCCGACGGGGGTGAGAACGAACAGGGCGACAAACACAGGCTACTGGAAGACCACCGGGAAAGACAAGGAAATCCTCAACAGTGCAACATCGGAGTTGGTTGGCATGAAAAAGACTTTGGTTTTCTACAAAGGCAGAGCTCCAAGAGGTGAAAAATCCAACTGGGTCATGCACGAATACCGTATCCACTCCAAATCCTCCTTCCGACTACACAAGCAGGATGAATGGGTGGTATGCAGAGTGTTCCAGAAGAGTGGAGGAGCCAAAAAGTACCCATCGAATAACACAAGAGGGGTGAATCCATATAGCCTGGAAATAGGTCCTAACATGGTGGCACCTTCAATGATGCATCATGTGGCGGATCCAAATTCTGCTCACTTCCTCTACGGAAGGAACTTTGTCAACACTGCTTCTGACCTTGCAGAGGTTGCTAGGGTTTTGAGAGCCGGAGGGGCTGCCTCCACCACCGCTGCTTTCAATTTACCAATGCAAACCCATGCTCCGCTAAACTATCCCGCCACAGCCCCCGGAGGATTTACCATTTCCGGCCTCAACTTGAATCTCGCCGGAGGAGGAGCAGCGGCAACTTCCGGGCAACCTGTTTACAGGCAGATGAACCCTCATGATGTGGGCCCCAACATGATGACAGCTGGCAGTTCTCTGAATGTATCAGATAGTGTAGGGTATGGTGCTACAGAAATGAGCAACCCTAATAATAATATTGGTCCGAGCAACAGGTTCATTGGGATGGACCATTGTGTGGATTTAGATAACTACTGGCCTTCCTACTAA 1143 0.4856 MKDQDPNYKASKTHLNKSLHSMQQKEKEAIRKEGRDKEMEGSGGGTSKEETLPPGFRFHPTDEELITSYLINKISDSAFSARAITDVDLNKCEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEILNSATSELVGMKKTLVFYKGRAPRGEKSNWVMHEYRIHSKSSFRLHKQDEWVVCRVFQKSGGAKKYPSNNTRGVNPYSLEIGPNMVAPSMMHHVADPNSAHFLYGRNFVNTASDLAEVARVLRAGGAASTTAAFNLPMQTHAPLNYPATAPGGFTISGLNLNLAGGGAAATSGQPVYRQMNPHDVGPNMMTAGSSLNVSDSVGYGATEMSNPNNNIGPSNRFIGMDHCVDLDNYWPSY 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00621 380 MobiDBLite consensus disorder prediction 19 44 - -
Accr3g00621 380 SUPERFAMILY NAC domain 50 201 IPR036093 GO:0003677|GO:0006355
Accr3g00621 380 Gene3D NAC domain 61 204 IPR036093 GO:0003677|GO:0006355
Accr3g00621 380 FunFam NAC domain-containing protein 100-like 61 205 - -
Accr3g00621 380 Pfam No apical meristem (NAM) protein 53 179 IPR003441 GO:0003677|GO:0006355
Accr3g00621 380 ProSiteProfiles NAC domain profile. 52 201 IPR003441 GO:0003677|GO:0006355
Accr3g00621 380 MobiDBLite consensus disorder prediction 1 57 - -
Accr3g00621 380 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 49 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00621 Accr-Chr3 6994388 6996406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00621 48 380 NAC Transcription Factor Family AT2G24430 51.275 9.78e-107 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Accr3g00621 NAM 2.9e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00621 - - lja:Lj1g3v2035130.1 479.174