Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00565 ATGAGTGTTGAACCCCAGAATTCTGAAGCAGAGAGCAGCTCAAACTCATTCTCCTCTCCACCCACTTCACCATCATCACCTCCTTCAAACAGGGATCTTAAAACCTCTGTCACGCAGGGGAAATCTCAGGAACCAGAATCCAAAAAGGTAAAACGCATTCGAGACTCCAATAAACATCCTGTGTATCGTGGGGTTCGTATGCGTAGTTGGGGCAAATGGGTATCTGAAATTCGCGAGCCACGCAAGAAATCTCGCATATGGCTGGGTACATTCTCAACCCCTGAAATGGCCGCCAGGGCACACGACGTCGCTGCTCTGAGCATCAAAGGGAACTCTGCCATTCTCAATTTCCCTCAACTAGCAGACTCTCTGCCCCGCCCTGCCTCTGTCTCTCCCCGTGATATTCAGGCCGCCGCAACAAAAGCCGCTCAAATGGATCAGTTTGACTCACCGTCGTCGTCGTCATCATCGTCATCTTCGGTTTCGACAATGGAAATGTGCAGTGGTTCTGAGGAATTGAGCGAGATCATAGAACTCCCAAGGCTGGAAACAAGTGAAGAGACGTGCGAGTTTAGGAAGGAGTTTGTGTTCGTGGACTCTTTATCTGACGGGTGGATGTATCAGCCACCATGGTTACAGAGCATGGAAGATTGTAACGGTTACGTCGCTGATCAGCTAGCAGAGTGTGGAATCATAAATAATCTTGATAGTTTGCTCTGGAATTACTGA 729 0.4883 MSVEPQNSEAESSSNSFSSPPTSPSSPPSNRDLKTSVTQGKSQEPESKKVKRIRDSNKHPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGNSAILNFPQLADSLPRPASVSPRDIQAAATKAAQMDQFDSPSSSSSSSSSVSTMEMCSGSEELSEIIELPRLETSEETCEFRKEFVFVDSLSDGWMYQPPWLQSMEDCNGYVADQLAECGIINNLDSLLWNY 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00565 242 SMART rav1_2 61 124 IPR001471 GO:0003700|GO:0006355
Accr3g00565 242 PRINTS Ethylene responsive element binding protein signature 84 100 IPR001471 GO:0003700|GO:0006355
Accr3g00565 242 PRINTS Ethylene responsive element binding protein signature 62 73 IPR001471 GO:0003700|GO:0006355
Accr3g00565 242 MobiDBLite consensus disorder prediction 1 20 - -
Accr3g00565 242 CDD AP2 62 118 IPR001471 GO:0003700|GO:0006355
Accr3g00565 242 MobiDBLite consensus disorder prediction 28 43 - -
Accr3g00565 242 FunFam Ethylene-responsive transcription factor 2 60 119 - -
Accr3g00565 242 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 32 189 - -
Accr3g00565 242 Gene3D AP2/ERF domain 61 119 IPR036955 GO:0003700|GO:0006355
Accr3g00565 242 Pfam AP2 domain 60 110 IPR001471 GO:0003700|GO:0006355
Accr3g00565 242 MobiDBLite consensus disorder prediction 125 164 - -
Accr3g00565 242 MobiDBLite consensus disorder prediction 44 60 - -
Accr3g00565 242 MobiDBLite consensus disorder prediction 1 60 - -
Accr3g00565 242 SUPERFAMILY DNA-binding domain 61 119 IPR016177 GO:0003677
Accr3g00565 242 ProSiteProfiles AP2/ERF domain profile. 61 118 IPR001471 GO:0003700|GO:0006355
Accr3g00565 242 MobiDBLite consensus disorder prediction 143 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00565 Accr-Chr3 6405964 6406692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00565 36 221 AP2-EREBP Transcription Factor Family AT5G11590 61.307 2.96e-69 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Accr3g00565 AP2 8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00565 K09286 - qsa:O6P43_015497 287.73