Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00562 ATGGAAGCACCTGAGTATTTCCAGGGCGGATTTCGCTCCCAATTCACTTCCTCCGACAACAACACCGACCATTTCATGGTGGAGGACCTCCTCAACTTCTCTCACGACGACGACGCCACCATCGCTGACCCTACCTTCCACGACTCTCCTCCCACCGATTCTTCTACTCTCATTAACTCCGTCGATTGCTCCAATTCCTCTTCCTTCTCCGCATGCGACCTGAATTTCAATCCTCACATTCCCTCTCGAAATTTACCCGACCCATATTTCTCCAGCGGCCTCTGCGTCCCGAGCGATGATATGGCAGACCTGGAATGGCTCTCGAATATTGGGGAGGAGTCATTTTCGTGCGAGGACCTGCAGAAACTGGAGCTGATATCGGGCATAAAAGCCCGAAACGAGCAAGTATCAGAAGGCCGTGAGTTGAAGCACCACGTAGAAACCAACCGGAATAACGTCATATTCAACCGCCAACTGTCGGTTCCGGCAAAGGCTCGCAGCAAGAGATCCCGTGGTCCCCCATGCAAGTGGACCTCTCGCCTCCTCGTAGTTTCTCCCACATCATCATCCTCTTCCGAACCGGACGTCATCCTTCTGGACCATCCCGGAAAGAAGCCGGGAAAGTCGAGGAGCAGGAAAAAAGAGAGCGCCGATGAAGGGTCCGGGGAGGGGCGGAAATGCCTGCATTGCGCGACAGATAAAACGCCGCAGTGGAGGACGGGGCCCATGGGCCCGAAGACGCTGTGCAACGCGTGTGGGGTGAGGTACAAGTCAGGGAGGCTGGTGCCGGAATACAGGCCGGCGGCGAGCCCGACGTTCGTACTGACAAAGCACTCCAATTCGCACCGGAAGGTGCTGGAGCTGCGAAGACAGAAGGAGATGATGAGGGCCCAGCAGCAGCCGCAGCAGCTCTTTCTACAACAACATCAAAACATGATGTTCGATGTGGCCAACGGCGACGATTACTTGATCCACCAACACGTGGGCCCAGATATCAGGCAGCTCATCCAGTACAAAAACTGCTAG 1026 0.5526 MEAPEYFQGGFRSQFTSSDNNTDHFMVEDLLNFSHDDDATIADPTFHDSPPTDSSTLINSVDCSNSSSFSACDLNFNPHIPSRNLPDPYFSSGLCVPSDDMADLEWLSNIGEESFSCEDLQKLELISGIKARNEQVSEGRELKHHVETNRNNVIFNRQLSVPAKARSKRSRGPPCKWTSRLLVVSPTSSSSSEPDVILLDHPGKKPGKSRSRKKESADEGSGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMMRAQQQPQQLFLQQHQNMMFDVANGDDYLIHQHVGPDIRQLIQYKNC 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00562 341 FunFam GATA transcription factor 216 303 - -
Accr3g00562 341 ProSitePatterns GATA-type zinc finger domain. 227 252 IPR000679 GO:0006355|GO:0043565
Accr3g00562 341 PIRSF Txn_fac_GATA_plant 10 316 IPR016679 GO:0003677|GO:0005634|GO:0045893
Accr3g00562 341 CDD ZnF_GATA 226 273 IPR000679 GO:0006355|GO:0043565
Accr3g00562 341 Pfam GATA zinc finger 227 260 IPR000679 GO:0006355|GO:0043565
Accr3g00562 341 PANTHER GATA TRANSCRIPTION FACTOR 15 302 - -
Accr3g00562 341 ProSiteProfiles GATA-type zinc finger domain profile. 221 257 IPR000679 GO:0006355|GO:0043565
Accr3g00562 341 MobiDBLite consensus disorder prediction 198 225 - -
Accr3g00562 341 Gene3D - 220 271 IPR013088 GO:0006355|GO:0008270
Accr3g00562 341 SMART GATA_3 221 271 IPR000679 GO:0006355|GO:0043565
Accr3g00562 341 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 223 285 - -
Accr3g00562 341 MobiDBLite consensus disorder prediction 186 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00562 Accr-Chr3 6360670 6361976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00562 21 336 C2C2-Gata Transcription Factor Family AT5G25830 50.147 7.40e-92 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Accr3g00562 GATA 3.1e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00562 - - qsa:O6P43_019485 407.527