Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00561 ATGATGGCGGTGAGCTCGGCGTGCAAAGATGGGAGCAAGGTGGCGATGGATAACGGCAAGTACGTGCGTTACACACCGGAGCAGGTGGAGGCTCTGGAGAGGCTCTATCACGAATGCCCCAAACCCAGCTCCATGCGCCGTCAGCAGATTATCCGAGAGTGTCCCATTCTCTCTAACATAGAGCCCAAACAGATCAAGGTTTGGTTCCAGAATCGAAGATGTAGAGAGAAGCAGCGAAAAGAAGCTTCACGCCTGCAAGGTGTAAACAGAAAACTGACGGCTATGAATAAACTGCTGATGGAGGAAAACGACAGATTGCAGAAACAGGTGTCCCAGCTGGTTTACGAGAACAGCTTTTTCCGCCAACATCAGAATACGACTCTGGCAACGACGGACACAAGTTGCGAGTCGGTGGTGACGAGCGGTCAGCACCATGTGACACCTCAGCATCCACCAAGGGATGCAAGCCCAGCTGGACTTTTGTCCATTGCAGAGGAGACTCTTGCAGAGTTTCTTTCAAAGGCCACTGGAACTGCTGTGGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCCCTGGAGTGGCGGCCCGCGCATGCGGCCTTGTGGGTTTGGAACCTACGAGGGTTGCCGAAATCCTCAAAGATCGGCCCTCATGGTGTCGTGACTGCCGAGCTGTGGATGTTCTAAATGCGATGACAACAGGAAATGGGGGAACCATTGAACTGCTTTACATGCAGTTGTATGCCCCAACAACTTTGGCTCCAGCTCGTGACTTCTGGCTGCTGCGTTACACTTCTGTTTTGGAGGATGGTAGTCTTGTGGTCTGTGAAAGATCACTTAACAACACTCAGAATGGTCCTACTATGCCACCAGCGCAGCATCTTGTGAGAGCAGACATGCTCCCAAGCGGGTATCTGATTAGACCTTGTGAAGGAGGTGGATCCATCATTCATATTGTTGATCACCTCAACTTAGAGCCTTGGAGTGTACCTGAAGTGTTACGCCCACTCTACGAGTCTTCAACGTTGTTTGCTCAAAAGACAGCCATGGCGGCTTTACGTCACCTGAGACAAATCTCTCAAGAAGTTTCTCAGCCAAATGTCACCGGATGGGGAAGAAGGCCTGCAGCTTTGCGAGCACTGAGTCAGCGTTTGAGCAGGGGCTTCAACGAAGCTGTCAATGGATTTGCAGACGATGGCTGGTCCATGTTGGAAAGTGATGGCATTGATGATGTCACCCTACTTGTGAATTTATCTCCTAGCAAGACCATGGGAGTAAATATTGGTTATAACAATGGGTTTCTTTCGATGAGCAGTTCCGTGCTATGTGCAAAAGCATCCATGTTGTTACAGAATGTCCCTCCTGCAATTCTTCTTAGATTCTTGCGGGAGCATCGATCAGAGTGGGCAGATAGCAATATTGATGCTTACTCAGCCGCTGCCATCAAAGCTGGTCCCTGTGCCTTGCCTGGGGTTCGAGCAGGAGGATTTGGTGGTCAGGTTATTCTTCCACTGGCGCACACAATTGAGAATGAAGAGTTTATGGAGGTCATCAAGCTTGAAAATATGGGATACTATAGAGAAGACATGACTATTCCGGGCGATATTTTCCTCTTGCAACTTTGTAGTGGAGTAGATGAGCGTGCTGTTGGCAGCTGTGCAGAACTCATTTTTGCTCCCATTGATGCATCTTTCTCTGATGATGCTCCCATTTTACCTTCCGGTTTTCGCATCATACCTCTTGATTCAGGCATGGATGCTGCTACTCCAAACCGAACACTTGATCTTGCTTCTGCTCTTGATGTTGGAACCACTGGAAACAAATCAGCTGGCGATAATGTTGCTCAATCTGGGAGCACAAAATCTGTGATGACAATAGCATTTCAGTTTGCATTTGAAGTCCATCTTCAAGATAGTGTAGCAGCTATGGCTAGGCAGTATGTTCGGAGTATTATTGCATCTGTTCAAAGGGTAGCATTGGCGCTATCCCCTTCCCACTTTGGTTCGCAAAACGGTCTTCGCCCTCCACCTGGCACTCCTGAGGCACAAACACTTGCTCAGTGGATCTGTCATAGCCATAGGACCTATCTAGGGGTAGAACTACTAAAATGTGAAGGCAGTGAATCCATTCTCAATTCCCTTTGGCATCACTCTGATGCAGTCTTGTGCTGCTCTTTAAAGGCTTTACCGGTTTTTACATTTGCAAATCAAGCGGGACTTGACATGCTTGAGACAACTTTGGTTGCTCTTCAAGACATCACTCTTGATAAAATTTTTGACGAGAATGGGAAGAAAACCCTGTTCTCTGAGTTGCCCCAGATAATGCAGCAGGGCTTTATGTGTCTGCAAGGAGGTATCTGCTTGTCCAGCATGGGGAGGCCAGTGTCTTACGAAAGAGCGGTTGCATGGAAAGTAATGAACGAAGAGGAAACGGCCCACTGCATTTGTTTCATGTTCATCAACTGGTCTTTTGTCTGA 2517 0.4831 MMAVSSACKDGSKVAMDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQIIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQGVNRKLTAMNKLLMEENDRLQKQVSQLVYENSFFRQHQNTTLATTDTSCESVVTSGQHHVTPQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPTRVAEILKDRPSWCRDCRAVDVLNAMTTGNGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPTMPPAQHLVRADMLPSGYLIRPCEGGGSIIHIVDHLNLEPWSVPEVLRPLYESSTLFAQKTAMAALRHLRQISQEVSQPNVTGWGRRPAALRALSQRLSRGFNEAVNGFADDGWSMLESDGIDDVTLLVNLSPSKTMGVNIGYNNGFLSMSSSVLCAKASMLLQNVPPAILLRFLREHRSEWADSNIDAYSAAAIKAGPCALPGVRAGGFGGQVILPLAHTIENEEFMEVIKLENMGYYREDMTIPGDIFLLQLCSGVDERAVGSCAELIFAPIDASFSDDAPILPSGFRIIPLDSGMDAATPNRTLDLASALDVGTTGNKSAGDNVAQSGSTKSVMTIAFQFAFEVHLQDSVAAMARQYVRSIIASVQRVALALSPSHFGSQNGLRPPPGTPEAQTLAQWICHSHRTYLGVELLKCEGSESILNSLWHHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLDKIFDENGKKTLFSELPQIMQQGFMCLQGGICLSSMGRPVSYERAVAWKVMNEEETAHCICFMFINWSFV 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00561 838 CDD bZIP 72 111 - -
Accr3g00561 838 Pfam MEKHLA domain 697 837 IPR013978 -
Accr3g00561 838 Pfam START domain 163 371 IPR002913 GO:0008289
Accr3g00561 838 SUPERFAMILY Homeodomain-like 19 82 IPR009057 -
Accr3g00561 838 SUPERFAMILY Bet v1-like 162 374 - -
Accr3g00561 838 Gene3D - 11 85 - -
Accr3g00561 838 SMART START_1 162 372 IPR002913 GO:0008289
Accr3g00561 838 CDD START_ArGLABRA2_like 157 372 - -
Accr3g00561 838 SMART HOX_1 17 83 IPR001356 GO:0003677
Accr3g00561 838 ProSiteProfiles 'Homeobox' domain profile. 15 79 IPR001356 GO:0003677
Accr3g00561 838 ProSiteProfiles START domain profile. 153 381 IPR002913 GO:0008289
Accr3g00561 838 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 16 838 IPR044830 GO:0003700
Accr3g00561 838 Pfam Homeodomain 20 78 IPR001356 GO:0003677
Accr3g00561 838 FunFam Homeobox-leucine zipper protein REVOLUTA 20 75 - -
Accr3g00561 838 Gene3D - 197 379 IPR023393 -
Accr3g00561 838 Coils Coil 89 116 - -
Accr3g00561 838 CDD homeodomain 20 80 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00561 Accr-Chr3 6343242 6349441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00561 16 838 Homeobox Transcription Factor Family AT4G32880 81.159 0.0 1409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Accr3g00561 START 6e-53 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00561 K09338 - zju:107420449 1519.6