Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00560 ATGGCTCGAACTGAATCAAAGTGTTGCATCACGTTTTTGTTTGTCCTCATCATGTTGACGATGACGATGAACTATGTGGCGTCCCATGAAAAAGGAGAAGAGGAGCTTTTATTATCGTTCAAGGCTTCCATCAACGACCCACTTCACCATCTCTCAGACTGGGTCGTCACTTCCTCTTCCTCCAGTATCTGCCACTGGAATGGTGTCACCTGCAACACTAACTCCCATGTTCGCGCCATCAACCTCTCCGGCAAGAACATATCCTCCTATAATATTTCCTCCTCCGTATTTCAACTTCCACACGTCGAACACATTGACCTCTCCGACAATCTGCTCTCTGGGGGAATCTCTTTCTCTCTCTCTTCCCTTCTCTATCTCAATCTTAGCAATAACAACTTCACGGGTCCTGTCCCATCATCATTTTCCCGCATCCAAATTCTGGATCTTTCGAACAACATGTTTTCCGGGGAAATACCCCACCAAATTGGATCACTCACGAGTCTGAGGTATGTTGATCTGGGAGGCAACGTTTTGGTGGGAAAGATTCCTGATTCTGTCACTAACATGACAGGTTTAGAGTACTTGACCTTGGCTTCTAACCAGCTCGTGGGTGAAATCCCTCCAAAAATTGTCCTTATGAAGAGCTTAAAGTGGATTTATTTCGGGTACAATAATCTCTCGGGTGAGATTCCAGAAAGAATCGGAGAACTGAAGAATTTGAATCATCTTGATCTTGTTTACAACAACCTCACTGGACACATTCCCGATTCTCTTGGGAACCTCACTAATCTTGAGTATCTTTTTCTCTACCAAAACAAGCTGACAGGTCGAATTCCACGGTCAATATTTGAGCTTAGAAAGCTTGTTTCACTTGATCTTAGTGACAATTTTCTGTCTGGTGAGATTTCAGAGCTCGTAATTCGGCTTCAGAGACTTGAAATTCTCCACCTTTTCTCCAACAACTTTACCGGCAAGATTCCAAACGCTGTAACCTCTCTGCCTCGGCTCCAAGTTCTTCAGCTATGGTCTAACGGATTAACGGGTGAGATCCCAGAGGATTTAGGAAAGCACAGCAACCTCACGGTTCTGGATCTTTCCACCAACAAACTTTCTGGGAAAATTCCAGATAGTTTATGTCACTCTGGCGCTCTTTACAAGCTTATCCTTTTCTCGAACTCTCTTCAAGGGGAATTACCAAACAGCTTAACCTCTTGCACAAGCTTGCGCCGAGTTCGCCTTCAGAACAATAAGTTCTCCGGTGGACTACCGTCCCGACTAACTCAACTGCCACAGGTGTATTTATTGGATATCTCCGGTAATCAACTCTCTGGCAGGATTGATGATAGGAAGTGGAATATGTTGTCGCTTCAAATGTTGAATTTGGGTAACAACAATTTCTCCGGTGAGTTGCCAACCATTTTTGGTAGTACAAAATTGGAGAAACTGGACTTATCCGAAAATCGATTTTCTGGTAATATTCCACGTCGGCTTGGAAGCTTATCGGAGCTGATGCAATTGAATCTGAGCAATAACAAACTATATGGTGAAATCCCACAAGAGCTCACTTCCTGCAGGAAGCTAGTGCTTTTAGATGTCAGCCACAATCAACTCACTGGTCAAATTCCGACCAGTCTCGGTGACATGCCGGTTCTGAGCTTGCTGGATTTATCAGATAACCAATTTTGGGGTAAAATTCCAGAGAATTTAGGCAGAGTAGAATCTCTAGTGCAGCTAAACATATCCCACAACCATTTTCACGGACATTTACCGGCCACCGGAGCTTTCCTCGCCATTAATGCCAGCGCCGTCACTGGCAACGACCTATGTGGTGGTTCCGGTGGGTTGCCGCCATGCAAAAAAGGCGATAAGAATCCATGGTTTGTCGTACTCTGGTTCGCGGTGGGATTTGTAGGGTTTGCATTAGCAGCCTTTCTAGTTACTTGTTCGCGTAGAAGAAACAGCTTGGAGCTGAAGAGAGTGGAAAACGAAGACGGTACGTGGGAGATTCAATTTTTCGATTCCAAGTTTGCAAAATCGATCGCAATGGACGATATTTTATCGTCGGCAAAAGCAGGACATGTGATCGCCAAAGGGAAGAACTGGGTTTCATACGAAGGGAAGTGCATGGCAAGTGGCATGCAATTCGAGGTGAAGGAAATCAGAGACTTAAATTCAGTTCCGTTAAGTTTCTGGGAAGACTTGATGGAATTGGGTAAGCTCCGGCATCCGAATATTTTTAAACTGATGGGACTATGTCGTTCGGGAAAAGGAGCATTTTTGGTGTATGAGGATGCAGAAGGAAAGAGTTTAAGTCAAGTTGTGAAGAATTTGAGCTGGGAAAGTCGACGGAAAATCACCGTCGGCATTGCAAAAGCACTAAAGTTTCTGCATGCTCAATACTCATCAGTTATTTTGGTCGGTGACATGTCGTCGGAAAGCATTATCGTCGACGGCAATGACATTCCACGCTTGAAGTTGAGCCCTCCGGCATTGTTTAAGGGCTCCATTTCTTCTCCTTACGTTGCCCCAGAAGTGAGGAATGGGAAGGAGGTGACAGAGAAGAGCGACGTGTATGGATTTGGTGTGGTTCTGATAGAACTGTTGACGGGAAGGAGGGGAGTGGGAACGGAGGAGGAGGGGAGCATAGTGGAGTGGGCCCGATTCTGCTATTCGGACTGTCATTGGGAGACGTGGATCGACCCGACAATGAAAGGTGGAAAGCAGAACGACGTCGTAGAGGCCATGAACCTGGCACTGCACTGCACCGCCATGGATCCCACAGCAAGGCCATGCGCAAGCGTCGTCTTCAAAGCACTCTCTGCGGTCACCTGCACTCACTCTGTTCTCTCTGTCTCTGCACTCCAACCATGA 2871 0.4601 MARTESKCCITFLFVLIMLTMTMNYVASHEKGEEELLLSFKASINDPLHHLSDWVVTSSSSSICHWNGVTCNTNSHVRAINLSGKNISSYNISSSVFQLPHVEHIDLSDNLLSGGISFSLSSLLYLNLSNNNFTGPVPSSFSRIQILDLSNNMFSGEIPHQIGSLTSLRYVDLGGNVLVGKIPDSVTNMTGLEYLTLASNQLVGEIPPKIVLMKSLKWIYFGYNNLSGEIPERIGELKNLNHLDLVYNNLTGHIPDSLGNLTNLEYLFLYQNKLTGRIPRSIFELRKLVSLDLSDNFLSGEISELVIRLQRLEILHLFSNNFTGKIPNAVTSLPRLQVLQLWSNGLTGEIPEDLGKHSNLTVLDLSTNKLSGKIPDSLCHSGALYKLILFSNSLQGELPNSLTSCTSLRRVRLQNNKFSGGLPSRLTQLPQVYLLDISGNQLSGRIDDRKWNMLSLQMLNLGNNNFSGELPTIFGSTKLEKLDLSENRFSGNIPRRLGSLSELMQLNLSNNKLYGEIPQELTSCRKLVLLDVSHNQLTGQIPTSLGDMPVLSLLDLSDNQFWGKIPENLGRVESLVQLNISHNHFHGHLPATGAFLAINASAVTGNDLCGGSGGLPPCKKGDKNPWFVVLWFAVGFVGFALAAFLVTCSRRRNSLELKRVENEDGTWEIQFFDSKFAKSIAMDDILSSAKAGHVIAKGKNWVSYEGKCMASGMQFEVKEIRDLNSVPLSFWEDLMELGKLRHPNIFKLMGLCRSGKGAFLVYEDAEGKSLSQVVKNLSWESRRKITVGIAKALKFLHAQYSSVILVGDMSSESIIVDGNDIPRLKLSPPALFKGSISSPYVAPEVRNGKEVTEKSDVYGFGVVLIELLTGRRGVGTEEEGSIVEWARFCYSDCHWETWIDPTMKGGKQNDVVEAMNLALHCTAMDPTARPCASVVFKALSAVTCTHSVLSVSALQP 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00560 956 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Accr3g00560 956 ProSiteProfiles Protein kinase domain profile. 689 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr3g00560 956 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 139 225 - -
Accr3g00560 956 SMART LRR_typ_2 453 476 IPR003591 -
Accr3g00560 956 SMART LRR_typ_2 548 572 IPR003591 -
Accr3g00560 956 SMART LRR_typ_2 261 285 IPR003591 -
Accr3g00560 956 SMART LRR_typ_2 120 143 IPR003591 -
Accr3g00560 956 SMART LRR_typ_2 189 213 IPR003591 -
Accr3g00560 956 SMART LRR_typ_2 237 260 IPR003591 -
Accr3g00560 956 SMART LRR_typ_2 500 524 IPR003591 -
Accr3g00560 956 SMART LRR_typ_2 358 381 IPR003591 -
Accr3g00560 956 SMART LRR_typ_2 333 357 IPR003591 -
Accr3g00560 956 Gene3D Transferase(Phosphotransferase) domain 1 766 950 - -
Accr3g00560 956 Gene3D Ribonuclease Inhibitor 209 308 IPR032675 -
Accr3g00560 956 Pfam Protein kinase domain 704 934 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr3g00560 956 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 653 764 - -
Accr3g00560 956 SUPERFAMILY RNI-like 80 372 - -
Accr3g00560 956 Gene3D Ribonuclease Inhibitor 144 208 IPR032675 -
Accr3g00560 956 Gene3D Ribonuclease Inhibitor 32 143 IPR032675 -
Accr3g00560 956 Gene3D Ribonuclease Inhibitor 309 622 IPR032675 -
Accr3g00560 956 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 315 614 - -
Accr3g00560 956 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 226 302 - -
Accr3g00560 956 SUPERFAMILY Protein kinase-like (PK-like) 686 939 IPR011009 -
Accr3g00560 956 ProSiteProfiles Leucine-rich repeat profile. 359 381 IPR001611 GO:0005515
Accr3g00560 956 SMART LRR_sd22_2 237 258 - -
Accr3g00560 956 SMART LRR_sd22_2 357 380 - -
Accr3g00560 956 SMART LRR_sd22_2 476 502 - -
Accr3g00560 956 SMART LRR_sd22_2 261 287 - -
Accr3g00560 956 Pfam Leucine rich repeat 478 537 IPR001611 GO:0005515
Accr3g00560 956 Pfam Leucine rich repeat 143 202 IPR001611 GO:0005515
Accr3g00560 956 Pfam Leucine rich repeat 239 296 IPR001611 GO:0005515
Accr3g00560 956 Pfam Leucine rich repeat 334 394 IPR001611 GO:0005515
Accr3g00560 956 PRINTS Leucine-rich repeat signature 360 373 - -
Accr3g00560 956 PRINTS Leucine-rich repeat signature 500 513 - -
Accr3g00560 956 Gene3D Phosphorylase Kinase; domain 1 655 763 - -
Accr3g00560 956 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 384 940 - -
Accr3g00560 956 SUPERFAMILY L domain-like 307 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00560 Accr-Chr3 6328972 6332213 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00560 10 939 Receptor kinase-like Gene Family AT2G25790 52.991 0.0 921
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Singleton Accr3g00560 Pkinase 3.7e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00560 - - gmx:100777118 1193.33