Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00463 ATGGCGAGAGAGAAGATAAAGATAAAGAGAATAGATAACGTGACGGCGAGGCAGGTGACTTTCTCTAAAAGAAGAAGAGGGCTCATCAAGAAAGCTTCGGAGCTTTCGGTTCTATGTGATGCTGAGGTTGGTCTCATTGTCTTTTCTGCTACCGGCAAGCTCTTTGAATACTCCAACTCCAGCATGAAGGACATAATTACAAGGTATAATATGTACTCTCGTGACATCAACAAAGAAGACAGGCCTTCTCTAGAATTGCAGCTAGAGAACAGCGAGAACTGCAAACTGAGTAAGGAGGTCGCCGAGAAAACACAGCAGCTAAGGCGCATGAAAGGTGAAGATCTTCAAGGACTAAACCTACAAGATTTGCTGCAACTCGAGAAACTTCTTGAAACTGGACTCTGCAGCGTAATTGAGACTAAGGAAAATCGGATTATGAGTGAGATCTCTGCACTTGAGAAAAAGGGATTGGAGTTGGTAGAAGAGAACAAGCAGCTGAAGCAGAAGATGGAGATGTTGTGTAAAGGAATAATGCAATCATCAGAAATTGGGATACAAGAAGAAGGCGTCTCTTCAGATTCATTGACAACCAACGTTTACAGCTGCAACAGTGGCCCTCCTGTTGACGATGATTCTTCCGACACTTCTCTTAAGTTAGGGTTGCCCTATTCCAGCTGA 678 0.4366 MAREKIKIKRIDNVTARQVTFSKRRRGLIKKASELSVLCDAEVGLIVFSATGKLFEYSNSSMKDIITRYNMYSRDINKEDRPSLELQLENSENCKLSKEVAEKTQQLRRMKGEDLQGLNLQDLLQLEKLLETGLCSVIETKENRIMSEISALEKKGLELVEENKQLKQKMEMLCKGIMQSSEIGIQEEGVSSDSLTTNVYSCNSGPPVDDDSSDTSLKLGLPYSS 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00463 225 MobiDBLite consensus disorder prediction 197 225 - -
Accr3g00463 225 FunFam Transcription factor, MADS-box 13 83 - -
Accr3g00463 225 Coils Coil 149 169 - -
Accr3g00463 225 Pfam K-box region 90 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Accr3g00463 225 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Accr3g00463 225 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Accr3g00463 225 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 168 - -
Accr3g00463 225 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Accr3g00463 225 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Accr3g00463 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Accr3g00463 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Accr3g00463 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Accr3g00463 225 SUPERFAMILY SRF-like 3 73 IPR036879 GO:0003677|GO:0046983
Accr3g00463 225 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Accr3g00463 225 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Accr3g00463 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00463 Accr-Chr3 5113714 5119974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00463 1 223 MADS-box Gene Family AT2G22540 56.667 1.74e-90 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Accr3g00463 K-box 7.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00463 - - tcc:18591803 294.278