Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00461 ATGGGCGGTGGTCCGCCTTCTTTCAATCCATTCACCGGAATTTCCTTCTTTTCCTTCATCCTCTACACCACAATCATACTCCTTGCAGCCACTGCTGCTTCTGAAACGTCATCTTCTTCTCTAGGTTCCACCGTCAATGACGACGGCGCGGGAAAAAATCCGCCACCTCCACCGCCATTGGGAAGTGAAGATGACGGATGGGAGAGAGAGTCTCCTTTTAAGCCCACCGTGGCCATTCTAATTGGGGTATTCTCAACCCTGTTTTTCATTACCTTTGTTTTTCTTCTGTGTGTTAAACAATGTAAACCAGAGGAGGCCCAAAGGAATTCACATACAGGAGGTGGCCATTTGGGGAGGAAGAACTCCGGCATTGACCGGGTTGTGATCGAGTCGTTACCCATTTTCAGATTCGGATCTTTAAGGGGCCAAAAAGACGGACTCGAATGCGCCGTTTGCCTGACCCAATTTGAGACCGTGGAGGTTCTTCGGCTGCTTCCAAAATGCAAGCACGCCTTCCATGTCGAATGCGTGGACACGTGGCTGGACGCGCATTCCACTTGCCCGCTTTGCCGGTACCGGGTCGACCCGGAAGACATCCTCCTGGTTGGGGAGCCCAAAGTTTGGCCGCATAATAATCAACCCATTCCACCGATACAAGAGATCTCCGAAGATCCGCAGCATTGTCCAGCAGACATAGAGACTGGCCTCGGACCGGATTCACAGGATCGGTTCGATTCAAACTCACTTCCCCGGAGAGTCTCCGGGAGGCACTCATCCGTAGGGGAGAGAAGTGGTGGGTTCTTCAAGATTTTATTGCAGCGCCGAAACAGCATGGATGGCGAAACGACGACGAGGCTGCAGAAGAAAACGGCGCCGTTTAGGATGTCACTGGACAGTGCAATGTCGTCGACGAAGAGGAAAAGAAACGAAACCGGAAAAGAAAAAGAAAGTGGGGAATGTGAGGGTCCAAGGAAAGACGGGTTACTGCTGACGGAGAAGGAGAAGAAACACAGATTGGAACACAGGATCATATTGTCTCCGTCTAAAAAGTCCAATGAAATTCATGAGAGATGGAGTGACGTACAGCCATCGGAATTACTATACCTGACGTCGGAGATGGTACTGAGCGAATCGTGTTCCTCGTCGGGGCGGTCGCATTCAGGGCGGCGACAGAATATGCAGCAGCAACTGAACCGGAGCAGAGGAGCGAACCGTACGGGGGCAATAAATGAGAGAAGCTTGTCGGAAATCACGGGATTGAGCCGGACGAGGAGAGGGGAAGGAGGGCATCGTCGGGAAGAAGAAGAAGAGAGAGAGGCGGGTGTACTATCGAGATGGGGGGCCTGGATCTCCCAGGCGCGGCGATCTCGATCTGTACGGTAG 1383 0.5235 MGGGPPSFNPFTGISFFSFILYTTIILLAATAASETSSSSLGSTVNDDGAGKNPPPPPPLGSEDDGWERESPFKPTVAILIGVFSTLFFITFVFLLCVKQCKPEEAQRNSHTGGGHLGRKNSGIDRVVIESLPIFRFGSLRGQKDGLECAVCLTQFETVEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLVGEPKVWPHNNQPIPPIQEISEDPQHCPADIETGLGPDSQDRFDSNSLPRRVSGRHSSVGERSGGFFKILLQRRNSMDGETTTRLQKKTAPFRMSLDSAMSSTKRKRNETGKEKESGECEGPRKDGLLLTEKEKKHRLEHRIILSPSKKSNEIHERWSDVQPSELLYLTSEMVLSESCSSSGRSHSGRRQNMQQQLNRSRGANRTGAINERSLSEITGLSRTRRGEGGHRREEEEEREAGVLSRWGAWISQARRSRSVR 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00461 460 SMART ring_2 149 190 IPR001841 -
Accr3g00461 460 MobiDBLite consensus disorder prediction 423 442 - -
Accr3g00461 460 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 54 456 - -
Accr3g00461 460 ProSiteProfiles Zinc finger RING-type profile. 149 191 IPR001841 -
Accr3g00461 460 FunFam RING-H2 finger protein ATL43 124 198 - -
Accr3g00461 460 MobiDBLite consensus disorder prediction 378 442 - -
Accr3g00461 460 Pfam Ring finger domain 148 191 IPR001841 -
Accr3g00461 460 MobiDBLite consensus disorder prediction 278 300 - -
Accr3g00461 460 MobiDBLite consensus disorder prediction 378 420 - -
Accr3g00461 460 CDD RING-H2_EL5-like 148 191 - -
Accr3g00461 460 MobiDBLite consensus disorder prediction 301 325 - -
Accr3g00461 460 MobiDBLite consensus disorder prediction 228 261 - -
Accr3g00461 460 MobiDBLite consensus disorder prediction 278 325 - -
Accr3g00461 460 SUPERFAMILY RING/U-box 126 196 - -
Accr3g00461 460 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 198 IPR013083 -
Accr3g00461 460 MobiDBLite consensus disorder prediction 38 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00461 Accr-Chr3 5087700 5089082 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00461 71 459 C3H Transcription Factor Family AT5G05810 42.788 1.04e-80 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00461 K19041 - jre:109009455 332.798