Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00460 ATGAAAATATATTATTCATTAATCCCTTTGTCTCCCTCAGATTACATTACAGTAACTTCAAACACCGAGCATCACTCTCGCTCGCACATGGGCGGTGGTCCGCCTTCTTTCAATCCATTCACCGGAATTTCCTTCTTTTCCTTCATCCTCTACACCACAATCATACTCCTTGCAGCCACTGCTGCTTCTGAAACGTCATCTTCTTCTCTAGGTTCCACCGTCAATGACGACGGCGCGGGAAAAAATCCGCCACCTCCACCGCCATTGGGAAGTGAAGATGACGGATGGGAGAGAGAGTCTCCTTTTAAGCCCACCGTGGCCATTCTAATTGGGGTATTCTCAACCCTGTTTTTCATTACCTTTGTTTTTCTTCTGTGTGTTAAACAATGTAAACCAGAGGAGGCCCAAAGGAATTCACATACAGGAGGTGGCCATTTGGGGAGGAAGAACTCCGGCATTGACCGGGTTGTGATCGAGTCGTTACCCATTTTCAGATTCGGATCTTTAAGGGGCCAAAAAGACGGACTCGAATGCGCCGTTTGCCTGACCCAATTTGAGACCGTGGAGGTTCTTCGGCTGCTTCCAAAATGCAAGCACGCCTTCCATGTCGAATGCGTGGACACGTGGCTGGACGCGCATTCCACTTGCCCGCTTTGCCGGTACCGGGTCGACCCGGAAGACATCCTCCTGGTTGGGGAGCCCAAAGTTTGGCCGCATAATAATCAACCCATTCCACCGATACAAGAGATCTCCGAAGATCCGCAGCATTGTCCAGCAGACATAGAGACTGGCCTCGGACCGGATTCACAGGATCGGTTCGATTCAAACTCACTTCCCCGGAGAGTCTCCGGGAGGCACTCATCCGTAGGGGAGAGAAGTGGTGGGTTCTTCAAGATTTTATTGCAGCGCCGAAACAGCATGGATGGCGAAACGACGACGAGGCTGCAGAAGAAAACGGCGCCGTTTAGGATGTCACTGGACAGTGCAATGTCGTCGACGAAGAGGAAAAGAAACGAAACCGGAAAAGAAAAAGAAAGTGGGGAATGTGAGGGTCCAAGGAAAGACGGGTTACTGCTGACGGAGAAGGAGAAGAAACACAGATTGGAACACAGGATCATATTGTCTCCGTCTAAAAAGTCCAATGAAATTCATGAGAGATGGAGTGACGTACAGCCATCGGAATTACTATACCTGACGTCGGAGATGGTACTGAGCGAATCGTGTTCCTCGTCGGGGCGGTCGCATTCAGGGCGGCGACAGAATATGCAGCAGCAACTGAACCGGAGCAGAGGAGCGAACCGTACGGGGGCAATAAATGAGAGAAGCTTGTCGGAAATCACGGGATTGAGCCGGACGAGGAGAGGGGAAGGAGGGCATCGTCGGGAAGAAGAAGAAGAGAGAGAGGCGGGTGTACTATCGAGATGGGGGGCCTGGATCTCCCAGGCGCGGCGATCTCGATCTGTACGGTAG 1470 0.515 MKIYYSLIPLSPSDYITVTSNTEHHSRSHMGGGPPSFNPFTGISFFSFILYTTIILLAATAASETSSSSLGSTVNDDGAGKNPPPPPPLGSEDDGWERESPFKPTVAILIGVFSTLFFITFVFLLCVKQCKPEEAQRNSHTGGGHLGRKNSGIDRVVIESLPIFRFGSLRGQKDGLECAVCLTQFETVEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLVGEPKVWPHNNQPIPPIQEISEDPQHCPADIETGLGPDSQDRFDSNSLPRRVSGRHSSVGERSGGFFKILLQRRNSMDGETTTRLQKKTAPFRMSLDSAMSSTKRKRNETGKEKESGECEGPRKDGLLLTEKEKKHRLEHRIILSPSKKSNEIHERWSDVQPSELLYLTSEMVLSESCSSSGRSHSGRRQNMQQQLNRSRGANRTGAINERSLSEITGLSRTRRGEGGHRREEEEEREAGVLSRWGAWISQARRSRSVR 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00460 489 MobiDBLite consensus disorder prediction 257 290 - -
Accr3g00460 489 CDD RING-H2_EL5-like 177 220 - -
Accr3g00460 489 MobiDBLite consensus disorder prediction 67 97 - -
Accr3g00460 489 SMART ring_2 178 219 IPR001841 -
Accr3g00460 489 SUPERFAMILY RING/U-box 155 225 - -
Accr3g00460 489 Pfam Ring finger domain 177 220 IPR001841 -
Accr3g00460 489 MobiDBLite consensus disorder prediction 452 471 - -
Accr3g00460 489 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 83 485 - -
Accr3g00460 489 MobiDBLite consensus disorder prediction 407 449 - -
Accr3g00460 489 MobiDBLite consensus disorder prediction 407 471 - -
Accr3g00460 489 MobiDBLite consensus disorder prediction 307 354 - -
Accr3g00460 489 MobiDBLite consensus disorder prediction 330 354 - -
Accr3g00460 489 ProSiteProfiles Zinc finger RING-type profile. 178 220 IPR001841 -
Accr3g00460 489 FunFam RING-H2 finger protein ATL43 153 227 - -
Accr3g00460 489 MobiDBLite consensus disorder prediction 307 329 - -
Accr3g00460 489 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 227 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00460 Accr-Chr3 5087613 5089082 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00460 100 488 C3H Transcription Factor Family AT5G05810 42.788 1.53e-80 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00460 K19041 - jre:109009455 332.798