Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00454 ATGAAAGGTGAATATGTGGAGCAACAGGCCAAAGCTTCCGATCCTCCAAATATGTTCTCCAAGCTTCACCACCATCCCTTCCCTCACCACCCCTTTCACCTCTCTCGTGATTCCCAAAACTCCGAGGATGACGACACTCGCAGCGCCACCGCCACTCCCAACCAACCTCCAAAGCCTTCCTCCGCCGATGGCTCCAGCATTGAGGTCGTCAGGCGTCCCAGAGGCCGCCCTCCCGGCTCCAAAAACAGGCCCAAGCCTCCTGTTATCATAACTCGCGACCCTGAGCCCACCATGAGTTCTTTCATCCTCGAAGTCCCCGGCGGTACGGATGTCGTCGAAGCGATTGCTCGCTTTTGTCGCCGCAAGAACACCGGTCTCTGTGTTTTAACTGGATCGGGAACCGTCGCTAACGTCACCCTTCGTCAGCCCTCTACCACCCCCGGGGCTACCGTTACTTTTCACGGCCGTTTCGATATTTTGTCCATATCCGCCACCTTTCTAGCCAACCAGCCAGCTGGCCCCGTGCCGGCGTTTCCTAACGGTTTTACGATATCGCTGGCGGGTCCGCAGGGTCAGATCGTCGGAGGACTGGTCGTCGGCAGTTTATTGGCGGCGGGAACCGTGTTCGTAATTGCCGCTTCCTTCAACAACCCATCTTACCACAGGCTACCTGCCGAAGAGGACGTCAGAAACTCCGTCTCTGGAGGCGGCGGAGATGGTCAGTCGCCGCCAGTCTCCGGAGGCGGTGGAGAGACTGGTCACGCGCCTGGTGATTCGTGTGGGATGTCTATGTACAGCTGTCAATTACCGTCGGATGTGATCTGGGCTCCAACTGCAAGACCACCGTCACCATACTGA 858 0.5758 MKGEYVEQQAKASDPPNMFSKLHHHPFPHHPFHLSRDSQNSEDDDTRSATATPNQPPKPSSADGSSIEVVRRPRGRPPGSKNRPKPPVIITRDPEPTMSSFILEVPGGTDVVEAIARFCRRKNTGLCVLTGSGTVANVTLRQPSTTPGATVTFHGRFDILSISATFLANQPAGPVPAFPNGFTISLAGPQGQIVGGLVVGSLLAAGTVFVIAASFNNPSYHRLPAEEDVRNSVSGGGGDGQSPPVSGGGGETGHAPGDSCGMSMYSCQLPSDVIWAPTARPPSPY 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00454 285 Gene3D - 98 233 - -
Accr3g00454 285 PIRSF ESCAROLA 7 276 IPR014476 GO:0003680
Accr3g00454 285 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 40 276 IPR014476 GO:0003680
Accr3g00454 285 MobiDBLite consensus disorder prediction 1 95 - -
Accr3g00454 285 CDD DUF296 101 215 IPR005175 -
Accr3g00454 285 ProSiteProfiles PPC domain profile profile. 95 236 IPR005175 -
Accr3g00454 285 SUPERFAMILY AF0104/ALDC/Ptd012-like 97 227 - -
Accr3g00454 285 MobiDBLite consensus disorder prediction 229 261 - -
Accr3g00454 285 Pfam Plants and Prokaryotes Conserved (PCC) domain 101 217 IPR005175 -
Accr3g00454 285 FunFam AT-hook motif nuclear-localized protein 99 234 - -
Accr3g00454 285 MobiDBLite consensus disorder prediction 45 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00454 Accr-Chr3 5050396 5051253 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00454 1 285 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 59.794 2.50e-107 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00454 - - qsa:O6P43_019569 362.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr3g00454 3 5050396 5051253 Accr3g00454 3 5050396 5051253 ECH