Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00438 ATGGAATTTGAGGAGCACGACGAGCAAGACGACGACATCGAGATCCCGGTGTCGCCTCCTGCTTACGACTCCCTCCCCAACAACTCTGTCCCCAGGTCCAAACTAAACGTCTCCGGAGCACCGGCAGGAGAGGATACTGGCACCTCCGCCGTCACCCCTGGCCGTAAAGCTGAGCCCGCCAGGTACCGAGAATGCCAAAAGAACCACGCCATCGGCCTCGGTGCACACGCGGTCGACGGCTGCGGAGAGTTCATCCCGGCGGGAGAGAAAGGCACGCTCGACGCTCTTAAATGCGCCGCTTGTAACTGTCACCGCAATTTCCACCGCAAGGAGACAGACAGCGGGGAGATGACCCCGTATCAGCCTCAGCCTCCGCCTCCGCCGCCGCCTCACTACCAGTACCACCAGCAGTATCCCCCATACTATCGTGCGCTGCCGCCTCCAGCTGGGTACCTCCACCACCATCTAACAGCTCAACCGATGGCGCTGCAGCGGTCGTTGGCTCTGCCAGCGCCGATTAGAGACGAAGAGGACATGTCGAATCCGAGCAGCAGCGGAGGCGGCGGAAGTGGCGGTGGGGGAGGGAAGAAAAGGAGCAGGACCAAGTTCACGCAGGAGCAGAAGGATAAGATGCTGGAATTCGCGGAGCGGGTCGGGTGGAGGATCCAGAAGCATGATGAAGCTGCGGTGGAGCAATTCTGTGCGGAAGCTGGTGTCAAGAGACATGTACTTAAGGTTTGGATGCACAATAACAAGAACACTCTGGGTAAGAAACCCTAA 780 0.5923 MEFEEHDEQDDDIEIPVSPPAYDSLPNNSVPRSKLNVSGAPAGEDTGTSAVTPGRKAEPARYRECQKNHAIGLGAHAVDGCGEFIPAGEKGTLDALKCAACNCHRNFHRKETDSGEMTPYQPQPPPPPPPHYQYHQQYPPYYRALPPPAGYLHHHLTAQPMALQRSLALPAPIRDEEDMSNPSSSGGGGSGGGGGKKRSRTKFTQEQKDKMLEFAERVGWRIQKHDEAAVEQFCAEAGVKRHVLKVWMHNNKNTLGKKP 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00438 259 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 61 111 IPR006456 -
Accr3g00438 259 MobiDBLite consensus disorder prediction 174 204 - -
Accr3g00438 259 SUPERFAMILY Homeodomain-like 183 257 IPR009057 -
Accr3g00438 259 MobiDBLite consensus disorder prediction 110 132 - -
Accr3g00438 259 Pfam ZF-HD protein dimerisation region 61 112 IPR006456 -
Accr3g00438 259 FunFam Zinc-finger homeodomain protein 2 185 257 - -
Accr3g00438 259 NCBIfam homeobox domain, ZF-HD class 196 253 IPR006455 -
Accr3g00438 259 Gene3D - 181 256 - -
Accr3g00438 259 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 49 255 - -
Accr3g00438 259 MobiDBLite consensus disorder prediction 1 60 - -
Accr3g00438 259 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 62 111 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00438 Accr-Chr3 4838517 4839296 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00438 1 255 ZF-HD Transcription Factor Family AT4G24660 49.618 9.21e-69 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Accr3g00438 ZF-HD_dimer 1.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00438 - - pcin:129294191 288.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr3g00438 3 4838517 4839296 Accr4g00504 4 4853930 4854706 CCT
Accr3g00438 3 4838517 4839296 Accr3g00438 3 4838517 4839296 ECH