Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00422 ATGGCGAGAATACACAGAAAACTCTTCCCAACACCATCCAATATAAACCAAACACAAGATTGTCCTGAATTTTGCGACCCAGCTTGCCCTTATAGCTGCTATTCTTTCCCGGACTACTACTTCCCGCCACCTCCACCTCCCCCGCCTCCTTTTTCAGCGACCGATCATTCCAGTTCAGGTTCTCATATCTCCTCCTATCTAATCATTCTTGCTTCTCTGTTCTCTGCCATTTTTATTCTCCTGGGTTTGTGCGTGATCAAAACCAAGTGTTACCCTAGTTGGTGTGGCTGGAGACAAAATGGATCCCGATCAGAGGCCTCAGATCAAGAGTTTATTGATGAGAACCAAGTCGATCACCCTGTCTGGTTTATCACCACCGCTGGTCTGCAACAATCGATTATAAATTCTATCACAGTTTGTAAGTATAAAAGGGGTGAAGGGTTGATCGAAGGAACCGAATGTTCTGTGTGTTTGAGCGAATTTCGCGAAGGTGAAACCTTGAGACTCTTGCCCAAGTGTAGCCATGCTTTTCACATACCCTGTATTGACACTTGGTTGCGTTCTCATACCAATTGTCCTCTCTGTCGAGCCGGGATCGTTTTGAACAATGTCAGACCTGGGGCTGCAGGGTCAAATGTCTCTTCAACGGAGCAGAACTCTGACAATTCACGTAGGAACCAAGATATTCAAACTGAGAATCCGCCAAATGATGGTGAAGTAAACAACAATATGCTTGTAATTGCAAATGGAGCGTCAGGAAACAGGGCTGGAACAGGGGAAATTACCCAAGACTTGAACGATAATTTGGTTTCAAAGGAGCACGCGAATGTTGTCCTCAATGATCCAAAAGAGGATCATGGGGTTTTGAAAGATGGGAAGTTAATTGGGATGAGGTCTTTGTCTATGGATTCTATACTGGCAAATCCTTCTGCTTCGGGAACTGAAGAAAGCCATCCAGGGTGTAGAGAAATGGTGCGTTCCTCTGTTACAAAATGTCTGCACCTGAGCCCTGTTCCAATGAAGAGGTCGTTCTCTTGCAGTGGAAGGATTCTATCTGCCAGAGATCACAGGAATCTACATATAAGCCTTCCTTATTAG 1098 0.4499 MARIHRKLFPTPSNINQTQDCPEFCDPACPYSCYSFPDYYFPPPPPPPPPFSATDHSSSGSHISSYLIILASLFSAIFILLGLCVIKTKCYPSWCGWRQNGSRSEASDQEFIDENQVDHPVWFITTAGLQQSIINSITVCKYKRGEGLIEGTECSVCLSEFREGETLRLLPKCSHAFHIPCIDTWLRSHTNCPLCRAGIVLNNVRPGAAGSNVSSTEQNSDNSRRNQDIQTENPPNDGEVNNNMLVIANGASGNRAGTGEITQDLNDNLVSKEHANVVLNDPKEDHGVLKDGKLIGMRSLSMDSILANPSASGTEESHPGCREMVRSSVTKCLHLSPVPMKRSFSCSGRILSARDHRNLHISLPY 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00422 365 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 54 201 IPR044675 -
Accr3g00422 365 SUPERFAMILY RING/U-box 147 201 - -
Accr3g00422 365 CDD RING-H2_EL5-like 153 196 - -
Accr3g00422 365 MobiDBLite consensus disorder prediction 206 242 - -
Accr3g00422 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 202 IPR013083 -
Accr3g00422 365 FunFam RING-H2 finger protein ATL54 129 202 - -
Accr3g00422 365 Pfam Ring finger domain 153 196 IPR001841 -
Accr3g00422 365 ProSiteProfiles Zinc finger RING-type profile. 154 196 IPR001841 -
Accr3g00422 365 MobiDBLite consensus disorder prediction 207 242 - -
Accr3g00422 365 SMART ring_2 154 195 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00422 Accr-Chr3 4705958 4707055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00422 1 213 C3H Transcription Factor Family AT1G72220 46.559 2.26e-61 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00422 - - aprc:113847030 363.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr3g00422 3 4705958 4707055 Accr3g00422 3 4705958 4707055 ECH