Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00402 ATGGCTCATCATCACCGCTCCCAGTTCGGCGACACCACATTCACCAAAGTGTTCGTGGGAGGACTAGCTTGGGAGACGCCCGCTGATGAAATGCGTAGATATTTCGAGCAGTTCGGATGCATTCTTGAAGCTGTTATCATCAACGATAAGCACACTGGAAAGTCTAAAGGCTATGGATTCGTAACTTTCCGCGATCCAGACTCAGCAAGAAAAGCCTGTGCTGATCCCAAACCTATGATATATGGAAGGAGAGCAAATTGCAATATTGCTTCTCTAGGACGCCCTCCATCTCCTCGAGGAACGAATATATCGGTGCAAGATGGTGGTAAACAAGTCACAGAACGAGAAAAGCCGGCAGCCTATTACAATGGATTTCCGGCAGCGGCAGCGCCACCTTCTCTGATGTACTCAGCAGCGTACAGCTATCCGACCTACATTCCTGATTATGGGTTCCACCAAGCACAATACTATCAACAAATCTATGGACAATCATATTCATATTACTCTGGGTATTGTGTTCAAACACCAAGGCCAAGGGCTGCATTACCATCTGCAGGTGCCTCCTATCCTTACTACCCTACGTATACCCCCATGGAAGACTGTTGTCCTCCTATGCCCTTTCTTTCTCCTACTGATTCTCGGACCCAGCAACGAAGCTCCTTGGAGGCGACAGCTGGAGTAGGTATAACTTCAGAAAGTGCCAGTAGCCAGGGGAAGAACTGA 723 0.4827 MAHHHRSQFGDTTFTKVFVGGLAWETPADEMRRYFEQFGCILEAVIINDKHTGKSKGYGFVTFRDPDSARKACADPKPMIYGRRANCNIASLGRPPSPRGTNISVQDGGKQVTEREKPAAYYNGFPAAAAPPSLMYSAAYSYPTYIPDYGFHQAQYYQQIYGQSYSYYSGYCVQTPRPRAALPSAGASYPYYPTYTPMEDCCPPMPFLSPTDSRTQQRSSLEATAGVGITSESASSQGKN 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00402 240 Gene3D - 2 109 IPR012677 -
Accr3g00402 240 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 74 IPR000504 GO:0003723
Accr3g00402 240 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 92 IPR000504 GO:0003723
Accr3g00402 240 PANTHER BOULE-RELATED 5 214 - -
Accr3g00402 240 MobiDBLite consensus disorder prediction 209 240 - -
Accr3g00402 240 SMART rrm1_1 16 88 IPR000504 GO:0003723
Accr3g00402 240 MobiDBLite consensus disorder prediction 206 240 - -
Accr3g00402 240 SUPERFAMILY RNA-binding domain, RBD 14 115 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00402 Accr-Chr3 4492214 4494827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00402 11 176 C2H2 Transcription Factor Family AT2G19380 30.120 2.97e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00402 K25006 - gmx:100787086 250.366