Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00397 ATGGCTGATTCACTCTCAGTTGGTTTTGATTCCCCACCACCTAAGTTTGGCGTATCTTTTGAGCAAACTATGAGAGAAGCAAAGTACTTAGATGACATCCAAACAAGTACCCAAGAGACCAAAGAAGCCTATCCAAATATTTTCCAAAAGGGTCTAGCAGAGCTCGTGGGTACTTATGTCATTGTATTTGTCGGATGTGGGGCTGGTCTGGTCAGTAACGTGGAGCAGCTTAACAGAGTGGGAGAAGCGCTGGCCGCAGGTCTTTCTTTGACGGTGGCTATATATTCAGTTGGTCATATCTCCGGTGGCCACTTCAATCCTGCAGTATCTATAGCCGCCGCTGTTGCTCGCAATCTTCCTTTCAAACTTGTGCCTATTTACGTGCTGTGCCAGCTGACGGGTGCTATACTGGCTAGCCTTACCCTCAAGGTGCTGTATGAAGGGCAGGCAGACATTAGGGTGGTGGTGACCCAGTACTCGAGTTCAACAAGTCACCTTGAGGCTTTGGTATGGGAGTTCATAGCCACTTTCATACTAATGCTCACCATTTGTGGTGTGGCGATTGATCACAGAGGGAGCAAAGACCTCGCTGGACTTGCAATAGGCACAGCAGTTCTAATCAACGTCATCGCTGTTGGGCCTATTACTGGAGCTTCCATGAATCCTGCGAGGAGTTTGGGGCCAGCCATTGTCTCTGGCGTCTTTAAAAAGATTGGGATCTATATCTTTAGCCCTATTATGGGAGCCACCACTGCCAGTGTGGTTTACAGTCTACTTAAGTACCCAAACCGGATAAAGGCCTGA 804 0.4813 MADSLSVGFDSPPPKFGVSFEQTMREAKYLDDIQTSTQETKEAYPNIFQKGLAELVGTYVIVFVGCGAGLVSNVEQLNRVGEALAAGLSLTVAIYSVGHISGGHFNPAVSIAAAVARNLPFKLVPIYVLCQLTGAILASLTLKVLYEGQADIRVVVTQYSSSTSHLEALVWEFIATFILMLTICGVAIDHRGSKDLAGLAIGTAVLINVIAVGPITGASMNPARSLGPAIVSGVFKKIGIYIFSPIMGATTASVVYSLLKYPNRIKA 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00397 267 Pfam Major intrinsic protein 47 256 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr3g00397 267 NCBIfam MIP family channel protein 53 256 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr3g00397 267 CDD MIP 49 259 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr3g00397 267 Gene3D Glycerol uptake facilitator protein. 18 266 IPR023271 -
Accr3g00397 267 ProSitePatterns MIP family signature. 104 112 IPR022357 -
Accr3g00397 267 PANTHER AQUAPORIN NIP2-1 33 263 IPR034294 -
Accr3g00397 267 PRINTS Major intrinsic protein family signature 86 110 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr3g00397 267 PRINTS Major intrinsic protein family signature 171 189 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr3g00397 267 PRINTS Major intrinsic protein family signature 123 142 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr3g00397 267 PRINTS Major intrinsic protein family signature 49 68 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr3g00397 267 PRINTS Major intrinsic protein family signature 202 224 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr3g00397 267 PRINTS Major intrinsic protein family signature 239 259 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr3g00397 267 SUPERFAMILY Aquaporin-like 45 263 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00397 Accr-Chr3 4396607 4397829 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00397 21 264 Major Intrinsic Protein MIP AT5G37810 42.629 3.64e-59 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00397 K09874 - gmx:100798380 300.827