Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00385 ATGTCGCACTTTGGAAGATCTGGTCCTCCAGACATCAGAGACACCTATTCCCTTCTCGTCCTCAATATTACTTTCCGTACAACTGCTGACGACCTCTACCCACTTTTTGACAAGTATGGCAAGGTCGTCGATGTCTTCATCCCCAGAGACCGAAGGACTGGCGAATCACGAGGCTTCGCTTTTGTTCGTTATAAGTATGCAGACGAGGCTCAGAAGGCAGTAGATAAGCTTGATGGAAGAGTGGTCGATGGAAGAGAAATCATGGTTCAATTCGCAAAATACGGACCTAATGCTGAGAAAATCCAAAAGGGAAGGATAGCGGAAACATCCTCCAAGCCAAGAGGGAGGTCAAGAAGCCGCAGTCCTCGTCCTAGGCATAGGGATGAACATAGAGACAGGGACTACAGGAGGAGAAGTCGCAGTAGGAGTAGGGAAAGATATGATCGTGACAAGTACCGTGAAAGGGATAGGGATTATCGTCGCCGAAGTAGGAGCCACAGTGTAAGTCCTGATCGGCATAAAGATCGTAGGAGAGGAAGAGATGACAAGGAGAGAAGAACTCGAAGCAGATCAGTTGATAGTGCTTCGCCTGTTCGGCATGGCTCCAGTCCTCGTAGAAGTCCATCTCCACAAAGGAGGTCTTCTCGAGATGAGCAGAATGATGAACAGAATAGTCGGGAGCAATCACCTGCTCAGAAGGATGTTTCACCACGTGATCGTCCTGTTGATTCTCGAAGCCCGTCTCACAAATCTGATGCTGATGAGGAGCCACTTATCACAGGATCTTCTGGTGGCCTTGCTATGACTTCTGTCCTCAGTTGTCTGGATAAAGTTGCTAAATCATGA 846 0.4823 MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGESRGFAFVRYKYADEAQKAVDKLDGRVVDGREIMVQFAKYGPNAEKIQKGRIAETSSKPRGRSRSRSPRPRHRDEHRDRDYRRRSRSRSRERYDRDKYRERDRDYRRRSRSHSVSPDRHKDRRRGRDDKERRTRSRSVDSASPVRHGSSPRRSPSPQRRSSRDEQNDEQNSREQSPAQKDVSPRDRPVDSRSPSHKSDADEEPLITGSSGGLAMTSVLSCLDKVAKS 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00385 281 SUPERFAMILY RNA-binding domain, RBD 8 102 IPR035979 GO:0003676
Accr3g00385 281 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Accr3g00385 281 MobiDBLite consensus disorder prediction 210 256 - -
Accr3g00385 281 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 14 243 - -
Accr3g00385 281 MobiDBLite consensus disorder prediction 194 209 - -
Accr3g00385 281 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 87 IPR000504 GO:0003723
Accr3g00385 281 FunFam Serine/arginine-rich splicing factor SC35 4 103 - -
Accr3g00385 281 CDD RRM_SRSF2_SRSF8 18 90 - -
Accr3g00385 281 MobiDBLite consensus disorder prediction 100 270 - -
Accr3g00385 281 Gene3D - 4 105 IPR012677 -
Accr3g00385 281 SMART rrm1_1 17 90 IPR000504 GO:0003723
Accr3g00385 281 MobiDBLite consensus disorder prediction 125 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00385 Accr-Chr3 4267842 4270810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00385 14 92 Eukaryotic Initiation Factors Gene Family AT3G11400 37.975 3.05e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00385 K12891 - qsa:O6P43_019650 272.322