Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00379 ATGATGAACCACAATGTGATGGCCCCTGATTTGAAATCACAAATCAATGCCGTTATTACGGCGATGTTGTGGATTTCGAATTCACCAGTGTTTCCCGGAGCAGGGATCCCGGAATTCATGGCTCTGCTTCGTGAGTTTCTGGGGAAATCCCAGAAAAAGCTCATGATGAAAAGGCTTAAGGACGGAGATGGCAAAGGAGGAGCTAAGGTCACCTCCTGGATTGATTCAATGAGAGCTTCCTCTCCGCCCCGAGTCAGACCCACCATTCATGATTGTGATAACTCAGACCTTCTTCGTCCTTCGGCGCTCAACGTGTTTGATCAGATAATATATAAATCCAGAGGAAAAAAGATTATAACCTTTCTCGACTACGATGGAACTCTCTCCCCGATTGTTGCAGACCCCGAGAAAGCATTCATGACCGAAAAGATGAGAGAAGCGGTGAAGAACATAGCCAGACATTTTCCCACAGCCATCGTGACTGGGAGGTGCATAGACAAGGTCTATAACTTTGTAAGACTGGCCGAACTGTACTATGCAGGCAGCCATGGCATGGACATCAAGGGGCCAACGAAAACACGAAACTCTAAGAAAGGTAAACGAGCAGTCCTCTTCCAACCTGCGAGCCAGTTCTTGCCCACGATCAATGAGGTGGAAAAAATCTTGGTGGAAAAAACAAAGTCTGTTCCGGGGGCTATGGTGGAGAATAACAAGTTTTGCTTGTCCGTGCACTTCCGTTGTGTTGAGGAGAAGAGTTGGGGTGCATTGGCAGAGCAAGTAAAATCAGTGCTCAACGATTACCCAAAACTTAGACTTACCCAAGGAAGAAAAGTTCTGGAGATCCGTCCAAACATCAAGTGGGACAAGGGCAAGGCTCTTGAGTTTTTGTTGCGGTCACTTGGATATGCGAAGTCTCAAGACGTATTTCCGATTTATATTGGTGATGACCGAACTGACGAGGATGCTTTCAAGGTTCTACGCAACAGAGGTCAAGGGATTGGGATTTTAGTGTCTAAAGTGCCAAGAGAAACAGAGGCTTCCTACAGTTTGCAAGATCCATCAGAAGTTGAGCAGTTTCTACGGCGTTTGGTGGAATATAAGAGAAGCAGGGTGAATCTAACAAGTGTTGAGACTTGTAGATTGTAG 1146 0.4607 MMNHNVMAPDLKSQINAVITAMLWISNSPVFPGAGIPEFMALLREFLGKSQKKLMMKRLKDGDGKGGAKVTSWIDSMRASSPPRVRPTIHDCDNSDLLRPSALNVFDQIIYKSRGKKIITFLDYDGTLSPIVADPEKAFMTEKMREAVKNIARHFPTAIVTGRCIDKVYNFVRLAELYYAGSHGMDIKGPTKTRNSKKGKRAVLFQPASQFLPTINEVEKILVEKTKSVPGAMVENNKFCLSVHFRCVEEKSWGALAEQVKSVLNDYPKLRLTQGRKVLEIRPNIKWDKGKALEFLLRSLGYAKSQDVFPIYIGDDRTDEDAFKVLRNRGQGIGILVSKVPRETEASYSLQDPSEVEQFLRRLVEYKRSRVNLTSVETCRL 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00379 381 NCBIfam HAD-IIB family hydrolase 121 328 IPR006379 -
Accr3g00379 381 CDD HAD_TPP 121 356 - -
Accr3g00379 381 Gene3D - 118 204 IPR023214 -
Accr3g00379 381 Gene3D - 211 376 IPR023214 -
Accr3g00379 381 NCBIfam trehalose-phosphatase 116 364 IPR003337 GO:0003824|GO:0005992
Accr3g00379 381 FunFam Trehalose 6-phosphate phosphatase 214 373 - -
Accr3g00379 381 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 51 371 IPR044651 GO:0004805|GO:0005992
Accr3g00379 381 Pfam Trehalose-phosphatase 121 354 IPR003337 GO:0003824|GO:0005992
Accr3g00379 381 SUPERFAMILY HAD-like 121 364 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00379 Accr-Chr3 4177770 4179701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00379 110 363 Trehalose Biosynthesis Gene Families AT1G70290 26.199 5.38e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00379 K01087 - gmx:100788641 506.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr3g00379 3 4177770 4179701 Accr4g00451 4 4357701 4359718 CCT