Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00377 ATGGCGGCTACAATGGGTTTCTACAGTAGCAGAGCACTTCATTCAGATCCTTTCAGGGGTGAGTTGATGGAAGTACTCGAACCTTTTATGAAAAGTCCTTCCACAACTCCCTCATCTCCTTGTTCAAATTCCTCTCTCCCTTCTACATCTTACTCTCCTTCTTCTCCCAGCTCCTCCCTCTCTGGTCCATCACTCCCTTCACAGCCCAGTTTTCTGGCAGATGGTTGCTCCACGTCCATGACCCCTATATTTAACGACGGGTTATCGAACAGCCTCAACACAATCGGCTTCGGGCAACCAAGCTCTGTTCTCGGGCTCAACCACCTAACCCCATTTCAGATTAACCAGATCCAAGCCCAGATCCAGCTCCAGAACCATCAAAACACGTGCTGGCAGCAAAATAGGGCCGCCTCCACCCTTGGCTTCTTGAGTCCCAAACCTATTCCGATGAAGCATGCAGGTGTGCCTCTTAAACCCACGAAGCTCTATCGAGGGGTCAGGCAGCGTCACTGGGGGAAGTGGGTCGCCGAGATCAGGCTACCTAAGAACCGCACGCGACTCTGGCTCGGCACCTTCGACACTGCTGAGGAAGCTGCCCTGGCCTATGACAAGGCCGCTTACAAGCTCAGAGGTGACTTTGCCAGGCTCAATTTCCCCAACCTTCGACATCAAGGTTCTTGTGTCGGCGGCGAGTTTGGGGAGTACAAGCCACTCCACTCCTCTGTTGACGCCAAGCTTGAAGCGATCTGCGAAAGTTTGGCCGATCTGCAGAAGCAGGGGAAATCAGGGAAGTCAACGGGCTCATCCAAAAGGGCGGGCGGGAGGTCAAAGGCGGGTTTGAAAGATGCTCAGCCGGTGGCCAACGTAGCCGATGTGAAGGTGGAAAGCGCTCCGTCACCAGCGATGACGGAGAGCGAGGGATCCGGGGGTTCTTCTCCCCTGTCGGATCTGACTTTCGCGGACGCGAGCGAGCCACAGTGGGACGGGGCTTTGGATAATCTGAATCTGCAGAAGTTCCCTTCTTATGAGATTGATTGGGCATCACTGTGA 1050 0.5429 MAATMGFYSSRALHSDPFRGELMEVLEPFMKSPSTTPSSPCSNSSLPSTSYSPSSPSSSLSGPSLPSQPSFLADGCSTSMTPIFNDGLSNSLNTIGFGQPSSVLGLNHLTPFQINQIQAQIQLQNHQNTCWQQNRAASTLGFLSPKPIPMKHAGVPLKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHQGSCVGGEFGEYKPLHSSVDAKLEAICESLADLQKQGKSGKSTGSSKRAGGRSKAGLKDAQPVANVADVKVESAPSPAMTESEGSGGSSPLSDLTFADASEPQWDGALDNLNLQKFPSYEIDWASL 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00377 349 ProSiteProfiles AP2/ERF domain profile. 162 219 IPR001471 GO:0003700|GO:0006355
Accr3g00377 349 MobiDBLite consensus disorder prediction 31 68 - -
Accr3g00377 349 Pfam AP2 domain 163 211 IPR001471 GO:0003700|GO:0006355
Accr3g00377 349 SMART rav1_2 162 225 IPR001471 GO:0003700|GO:0006355
Accr3g00377 349 MobiDBLite consensus disorder prediction 258 272 - -
Accr3g00377 349 FunFam Ethylene-responsive transcription factor 2 161 220 - -
Accr3g00377 349 Gene3D AP2/ERF domain 162 220 IPR036955 GO:0003700|GO:0006355
Accr3g00377 349 PRINTS Ethylene responsive element binding protein signature 163 174 IPR001471 GO:0003700|GO:0006355
Accr3g00377 349 PRINTS Ethylene responsive element binding protein signature 185 201 IPR001471 GO:0003700|GO:0006355
Accr3g00377 349 MobiDBLite consensus disorder prediction 257 323 - -
Accr3g00377 349 MobiDBLite consensus disorder prediction 30 68 - -
Accr3g00377 349 SUPERFAMILY DNA-binding domain 162 220 IPR016177 GO:0003677
Accr3g00377 349 CDD AP2 161 221 IPR001471 GO:0003700|GO:0006355
Accr3g00377 349 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 4 349 - -
Accr3g00377 349 MobiDBLite consensus disorder prediction 301 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00377 Accr-Chr3 4154477 4155526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00377 1 349 AP2-EREBP Transcription Factor Family AT1G78080 53.719 4.96e-97 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Accr3g00377 AP2 7.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00377 K09286 - qsa:O6P43_015285 397.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr3g00377 3 4154477 4155526 Accr4g00450 4 4341714 4342790 CCT