Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00346 ATGGAGGATTTGCAGGCTGCTCTAAAGGATCGTAATTTAACGGTTTCCACCGTGGAAGATAAGGGTCGTTGTCTCTTAGCTACGAGAGATTTTTACCCAGGAGACGTAATTATAAGCCAAGAGTCATATGTCTGTGTGCCAAATAATTCTTCAGTCGAAACAAGGTGTGATGGGTGTTTCGCAACAAGTAAACTTAAAAAGTGCTCTGGTTGTCAAGTTGTATGGTATTGTGGAAGTACATGCCAGAGGGAAGAGTGGAAGTTGCATCGTCTTGAATGTGAAGTCCTCTCAAGGCAGGAAAAGAACAAGAGAACATCCGTCACACCATCCATTCGCCTGATGGTAAAACTTTATATTCGAAGGAAGTTGCAAAGTGAAAAGGTTATCCCAAGCACCGCTACAGACAACTATAACTTGGTGGAGGCATTAGTGGCACACATGTCTGATATAAATGAGGAACAGCTGCTTCTGTATGCACAGATGGCTAATCTTGTAAGCTTAATATTACAGTGGCCTGAAATCAACATAAAAGAGATTACTGAAAACTTTTCCAAGTTTGCATGCAATGCACATACCATTTGTGACAGTGAACTGAGACCGTTGGGGACAGGATTGTATCCTGTAATTTCCATAATCAACCACAGTTGCTTGCCCAATTCAGTTTTGGTTTTTGAGGGAAGGTCAGCTGTAGTACGTGCTGTACAACATATATCCAAAGGTTCAGAAGTTCTGATAAGTTATATAGAGACTGCTGGGAGCACTATGACCCGGCAGAAGCCTCTCAAAGAGCAGTACCTATTCACTTGCTCCTGCCCCCGCTGTGTTAAAGTGGGCCAATCTGATGATATTCGAGAAAGTGCAATTTTGGAAGGATACAGATGCAAGAATGAAAAATGCTGTGGTTTCTTGATTCGTACTAATGATGGAAAAGGATTACAATGCCAAGAATGTGGACTAGTCAGGGACATGGAAGAGATAAAGTTGATTGCAACGGAAGTAAAATCACTGTCTGAAGACAAAGCTTCTAAACTTCATACAACGGGCAATTATCAGGAAGCTGTTGCTGTATACAAAATAATTGAGAAATTCCAATCAAAATTGTGCCATCCCTTTTCAATCAGCTTGATGCAAACTCGAGAAAAGCTTTTGAAGTTATTGATGGAGTTGGAACATTGGAGGGAAGCTCTGGCATACTGCAAATTGACCCTACCTGTCTATCAGAGAGTTTATCCAGCAGTTCATCCGTTGCTTGGTTTGCAATATTATACTTGTGGAAAGCTTGAATGGTATCTGGGGGACACGGAGGGTGCTGTTAAATCGCTGACTAGGGCTGTGGATATACTAAGAATCACTCACGGCACAAATACACCTTTCATGAAGGAACTATTGATGAAGTTGGAAGAAGCCCGTGCAGAAGCCTCTTACCAACAGTCCTCCAAAGACAAGTAG 1449 0.4189 MEDLQAALKDRNLTVSTVEDKGRCLLATRDFYPGDVIISQESYVCVPNNSSVETRCDGCFATSKLKKCSGCQVVWYCGSTCQREEWKLHRLECEVLSRQEKNKRTSVTPSIRLMVKLYIRRKLQSEKVIPSTATDNYNLVEALVAHMSDINEEQLLLYAQMANLVSLILQWPEINIKEITENFSKFACNAHTICDSELRPLGTGLYPVISIINHSCLPNSVLVFEGRSAVVRAVQHISKGSEVLISYIETAGSTMTRQKPLKEQYLFTCSCPRCVKVGQSDDIRESAILEGYRCKNEKCCGFLIRTNDGKGLQCQECGLVRDMEEIKLIATEVKSLSEDKASKLHTTGNYQEAVAVYKIIEKFQSKLCHPFSISLMQTREKLLKLLMELEHWREALAYCKLTLPVYQRVYPAVHPLLGLQYYTCGKLEWYLGDTEGAVKSLTRAVDILRITHGTNTPFMKELLMKLEEARAEASYQQSSKDK 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00346 482 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 15 468 - -
Accr3g00346 482 Gene3D SET domain 24 274 IPR046341 -
Accr3g00346 482 Gene3D Tetratricopeptide repeat domain 402 481 IPR011990 GO:0005515
Accr3g00346 482 ProSitePatterns Zinc finger MYND-type signature. 56 93 IPR002893 -
Accr3g00346 482 ProSiteProfiles SET domain profile. 11 248 IPR001214 GO:0005515
Accr3g00346 482 Pfam SET domain 22 247 IPR001214 GO:0005515
Accr3g00346 482 SUPERFAMILY SET domain 10 247 IPR046341 -
Accr3g00346 482 Gene3D - 106 190 - -
Accr3g00346 482 SUPERFAMILY TPR-like 340 447 IPR011990 GO:0005515
Accr3g00346 482 Pfam MYND finger 56 93 IPR002893 -
Accr3g00346 482 ProSiteProfiles Zinc finger MYND-type profile. 56 93 IPR002893 -
Accr3g00346 482 Gene3D - 55 102 - -
Accr3g00346 482 SMART set_7 11 254 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00346 Accr-Chr3 3710631 3716339 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Accr3g00346 SET 4.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00346 K11426 - qsa:O6P43_015224 780.785