Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00345 ATGCGAGAGACAGCAGCGATGGAGGATTTGCAGGCTGCTCTAAAGGATCGTAATTTAACGGTTTCCACCGTGGAAGATAAGGGTCGTTGTCTCTTAGCTACGAGAGATTTTTACCCAGGAGACGTAATTATAAGCCAAGAGTCATATGTCTGTGTGCCAAATAATTCTTCAGTCGAAACAAGGTGTGATGGGTGTTTCGCAACAAGTAAACTTAAAAAGTGCTCTGGTTGTCAAGTTGTATGGTATTGTGGAAGTACATGCCAGAGGGAAGAGTGGAAGTTGCATCGTCTTGAATGTGAAGTCCTCTCAAGGCAGGAAAAGAACAAGAGAACATCCGTCACACCATCCATTCGCCTGATGGTAAAACTTTATATTCGAAGGAAGTTGCAAAGTGAAAAGGTTATCCCAAGCACCGCTACAGACAACTATAACTTGGTGGAGGCATTAGTGGCACACATGTCTGATATAAATGAGGAACAGCTGCTTCTGTATGCACAGATGGCTAATCTTGTAAGCTTAATATTACAGTGGCCTGAAATCAACATAAAAGAGATTACTGAAAACTTTTCCAAGTTTGCATGCAATGCACATACCATTTGTGACAGTGAACTGAGACCGTTGGGGACAGGATTGTATCCTGTAATTTCCATAATCAACCACAGTTGCTTGCCCAATTCAGTTTTGGTTTTTGAGGGAAGGTCAGCTGTAGTACGTGCTGTACAACATATATCCAAAGGTTCAGAAGTTCTGATAAGTTATATAGAGACTGCTGGGAGCACTATGACCCGGCAGAAGCCTCTCAAAGAGCAGTACCTATTCACTTGCTCCTGCCCCCGCTGTGTTAAAGTGGGCCAATCTGATGATATTCGAGAAAGTGCAATTTTGGAAGGATACAGATGCAAGAATGAAAAATGCTGTGGTTTCTTGATTCGTACTAATGATGGAAAAGGATTACAATGCCAAGAATGTGGACTAGTCAGGGACATGGAAGAGATAAAGTTGATTGCAACGGAAGTAAAATCACTGTCTGAAGACAAAGCTTCTAAACTTCATACAACGGGCAATTATCAGGAAGCTGTTGCTGTATACAAAATAATTGAGAAATTCCAATCAAAATTGTGCCATCCCTTTTCAATCAGCTTGATGCAAACTCGAGAAAAGCTTTTGAAGTTATTGATGGAGTTGGAACATTGGAGGGAAGCTCTGGCATACTGCAAATTGACCCTACCTGTCTATCAGAGAGTTTATCCAGCAGTTCATCCGTTGCTTGGTTTGCAATATTATACTTGTGGAAAGCTTGAATGGTATCTGGGGGACACGGAGGGTGCTGTTAAATCGCTGACTAGGGCTGTGGATATACTAAGAATCACTCACGGCACAAATACACCTTTCATGAAGGAACTATTGATGAAGTTGGAAGAAGCCCGTGCAGAAGCCTCTTACCAACAGTCCTCCAAAGACAAGTAG 1467 0.4213 MRETAAMEDLQAALKDRNLTVSTVEDKGRCLLATRDFYPGDVIISQESYVCVPNNSSVETRCDGCFATSKLKKCSGCQVVWYCGSTCQREEWKLHRLECEVLSRQEKNKRTSVTPSIRLMVKLYIRRKLQSEKVIPSTATDNYNLVEALVAHMSDINEEQLLLYAQMANLVSLILQWPEINIKEITENFSKFACNAHTICDSELRPLGTGLYPVISIINHSCLPNSVLVFEGRSAVVRAVQHISKGSEVLISYIETAGSTMTRQKPLKEQYLFTCSCPRCVKVGQSDDIRESAILEGYRCKNEKCCGFLIRTNDGKGLQCQECGLVRDMEEIKLIATEVKSLSEDKASKLHTTGNYQEAVAVYKIIEKFQSKLCHPFSISLMQTREKLLKLLMELEHWREALAYCKLTLPVYQRVYPAVHPLLGLQYYTCGKLEWYLGDTEGAVKSLTRAVDILRITHGTNTPFMKELLMKLEEARAEASYQQSSKDK 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00345 488 Gene3D Tetratricopeptide repeat domain 408 487 IPR011990 GO:0005515
Accr3g00345 488 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 21 474 - -
Accr3g00345 488 SUPERFAMILY SET domain 16 253 IPR046341 -
Accr3g00345 488 Gene3D - 61 108 - -
Accr3g00345 488 Pfam SET domain 28 253 IPR001214 GO:0005515
Accr3g00345 488 ProSiteProfiles SET domain profile. 17 254 IPR001214 GO:0005515
Accr3g00345 488 SMART set_7 17 260 IPR001214 GO:0005515
Accr3g00345 488 SUPERFAMILY TPR-like 346 453 IPR011990 GO:0005515
Accr3g00345 488 Gene3D SET domain 30 280 IPR046341 -
Accr3g00345 488 Pfam MYND finger 62 99 IPR002893 -
Accr3g00345 488 Gene3D - 112 196 - -
Accr3g00345 488 ProSiteProfiles Zinc finger MYND-type profile. 62 99 IPR002893 -
Accr3g00345 488 ProSitePatterns Zinc finger MYND-type signature. 62 99 IPR002893 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00345 Accr-Chr3 3710631 3716357 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Accr3g00345 SET 4.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00345 K11426 - qsa:O6P43_015224 780.785