LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr3g00343	ATGGATGGGAAGGCTAACCTTCCGGTCTCACCTCCAACTTCCAAGAATCTGATCCGTCCAATCAATCCCGATACTACATCGTCTTCCTCATCATCCCTCTCTTCTTCCTCACCGCCGGACTTCCTCCGGCATGTTCAAGCAGCCTTCAAGCGTCATCGTCCTCTCGGTACAGTGCAATCAAATATAAGGCCAAGGCGCATGATGGTTCCTCAACGTGAGGTTTCAAGAAATTCTACACTGAAAGTTGGTCCAAATGTAGATGATAAGAAGTCCCAGGAGATATCTTCAAGTAAGGTTCAGTCGGAGATGGAGTCATGTGCACATAGAAATAGCACACCTTCAATGATTAGAGAAGGTCAAGAGGACGTATCAATCACACCTACTTCTGTTTCTGGCAGTTGCTACAATGCACTTGACAAAGGATGCAATCCATTGAATGCACAAGATTGTCATTTAAATGTAACGACTAACTGTAAAGACAAAGTTGTCACGCATTCTTTGCTGGTGGAATCTCAAAATGTAGATGGTCAGAAGAAGGTCCAGTTCTCAGTAGGAAACAACACTACTGCCCAGGGGGCCGATGATGGAAAGGCCACTGAGTTGGAGAACTTATCATCTCATATGGGTTCACTTGCATTGACAGAAATGGAATGGGCTGCAAGCACCCAGCCGGAAGAACTTAATTTATTCAATCAAGATCCAAAGCACCAAAGTGTTTTGCAGGCAGAATCTGAATTAACTTTGAGATCTGATGGAGGATTAAATTCGCAGTTGGCAAAAAGAACAACAGCTATTCTGGATCATCTGCAGCAATTCAGAAGCTTTTTAAATCAGCCAGCTACTCAATCTTCAGTAGTGGGACCTTCATGTGCTACCACAACATCTGTCCATTCATCTTCAGCTCCTATGCTAAATTCAACAACCCATTATTCTCAGTCACATGTTGATATAGGTTCAAATGTGGCAGCAGAACTTTTGAGAGAAAATAATGTTAATAGTCATCTGATAACTCAAGGAGTTGTAAAGTCATCTAGCACTTTAAAAGAGGCCAATAAAATGTCAGTGGATCAAGCATCTGTCGTACCAAGTTCTGCCACTAATGCAGGGATACCATCCAAGGATGTTGACCTATGTAAGGAGCAGCAAGGCAGCTTGCTAAAGGAAAGTAACATTTCTAAAAGTACTTGTGATGATAAGCCATCTAAGGGGAAGGGATCTGCAGATGTTACCAACATAGAATCTCAGGCTCCAATTTCTAGAACTTCATTTTCAGATGTTAAGTTGAACTCATCCAAGTCAGAAAAACAAGAGAAGGCAGTCAGTAGTAAAGGCACATCAACTACTCGGAAAAGGGCCTATGACCCTGATTTGTTTTTCAAAGTAAATGGCAAGCTGTATCAAAGGCTTGGCAAGATAGGTAGTGGAGGAAGTAGTGAAGTACACAAAGTAATATCATCAGACTGTACAATCTATGCCCTTAAAAAGATCAAGTTAAAGGGTCGTGACTATGCCACTGCATATGGGTTCTGTCAAGAGATGGAGTATCTAAATAGGCTGAAGGGAAAGAATAATATTATACAGCTGATTGACTATGAGGTGACTGACAAGACTTTGCTTGATGAAGTCTTGAGGGGCTCCTTGAGTAATAAAGACAGCCGAGTCAAGGATGATGGATATATATACATGGTGCTTGAATATGGAGAAATTGATTTGGCTCATATGCTGTCTCAGAAGTGGAAGGAACTGGACGGATACAACCAGACCATAGATGAGAATTGGCTTCGATTTTATTGGCAGCAAATACTTCAAGCTGTCAATACAATACACGAGGAACGTATAGTGCATTCTGACCTGAAGCCAGCTAACTTTCTTCTTGTCAAGGGATCCCTAAAACTGATTGATTTTGGCATAGCCAAAGCAATAATGAGCGATACAACAAATATCCAACGGGATTCACAGGTGGGTACTCTGAGTTACATGTCTCCAGAGGCATTTTTGTGCAATGAGAGTGATGCAAATGGAAACATCATAAAGTGTGGCCGACCATCGGATATTTGGTCTCTGGGCTGCATTCTCTATCAAATGGTATACGGCAGGACACCATTTTCGGAGTACAAGACGTTCTGGGCCAAATTCAAAGTGATAACAGATCCAAACCATGAAATTACGTATGAACCGGTTTCAAACCCATGGCTTCTGGATCTCATGAAGAGGTGTCTAGCATGGGACCGTAATGAAAGATGGAGAATTCCTCAACTTCTCCAACATCCGTTTCTTGTTCCACCAACTCCGCCACAGCCTTCCCGGTCCCAAGACCAAAGCTTTAAATTGCTGCAATTTGTAGCTGAAACTTGTATAGATGACCCAGAAGCTTCAAAGCTCTGTTGTCAGCTCCAGCAGGTGGTTGGCGATCCCCTCAAGTTAATAACTCCCCACCCTCTTAACTCACGGGACCAACAATGTAAACTATTGTCCCAATTGTCAGAACTTTGCCTACAGCTGCATGAGCGACTAAAAAGTTCTGATAGAGAAGCAAGTTAG	2541	0.425	MDGKANLPVSPPTSKNLIRPINPDTTSSSSSSLSSSSPPDFLRHVQAAFKRHRPLGTVQSNIRPRRMMVPQREVSRNSTLKVGPNVDDKKSQEISSSKVQSEMESCAHRNSTPSMIREGQEDVSITPTSVSGSCYNALDKGCNPLNAQDCHLNVTTNCKDKVVTHSLLVESQNVDGQKKVQFSVGNNTTAQGADDGKATELENLSSHMGSLALTEMEWAASTQPEELNLFNQDPKHQSVLQAESELTLRSDGGLNSQLAKRTTAILDHLQQFRSFLNQPATQSSVVGPSCATTTSVHSSSAPMLNSTTHYSQSHVDIGSNVAAELLRENNVNSHLITQGVVKSSSTLKEANKMSVDQASVVPSSATNAGIPSKDVDLCKEQQGSLLKESNISKSTCDDKPSKGKGSADVTNIESQAPISRTSFSDVKLNSSKSEKQEKAVSSKGTSTTRKRAYDPDLFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCTIYALKKIKLKGRDYATAYGFCQEMEYLNRLKGKNNIIQLIDYEVTDKTLLDEVLRGSLSNKDSRVKDDGYIYMVLEYGEIDLAHMLSQKWKELDGYNQTIDENWLRFYWQQILQAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRDSQVGTLSYMSPEAFLCNESDANGNIIKCGRPSDIWSLGCILYQMVYGRTPFSEYKTFWAKFKVITDPNHEITYEPVSNPWLLDLMKRCLAWDRNERWRIPQLLQHPFLVPPTPPQPSRSQDQSFKLLQFVAETCIDDPEASKLCCQLQQVVGDPLKLITPHPLNSRDQQCKLLSQLSELCLQLHERLKSSDREAS	846

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr3g00343	846	CDD	PKc_Mps1	464	759	IPR027084	-
	Accr3g00343	846	SUPERFAMILY	Protein kinase-like (PK-like)	460	769	IPR011009	-
	Accr3g00343	846	SMART	serkin_6	466	759	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr3g00343	846	ProSiteProfiles	Protein kinase domain profile.	466	759	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr3g00343	846	ProSitePatterns	Protein kinases ATP-binding region signature.	472	494	IPR017441	GO:0005524
	Accr3g00343	846	MobiDBLite	consensus disorder prediction	407	429	-	-
	Accr3g00343	846	PANTHER	MIXED LINEAGE PROTEIN KINASE	26	784	-	-
	Accr3g00343	846	Gene3D	Transferase(Phosphotransferase) domain 1	581	762	-	-
	Accr3g00343	846	FunFam	serine/threonine-protein kinase mph1 isoform X2	459	546	-	-
	Accr3g00343	846	MobiDBLite	consensus disorder prediction	1	39	-	-
	Accr3g00343	846	Pfam	Protein kinase domain	466	759	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr3g00343	846	Gene3D	Phosphorylase Kinase; domain 1	459	543	-	-
	Accr3g00343	846	MobiDBLite	consensus disorder prediction	96	110	-	-
	Accr3g00343	846	MobiDBLite	consensus disorder prediction	389	449	-	-
	Accr3g00343	846	FunFam	serine/threonine-protein kinase mph1 isoform X1	580	762	-	-
	Accr3g00343	846	MobiDBLite	consensus disorder prediction	71	110	-	-
	Accr3g00343	846	MobiDBLite	consensus disorder prediction	9	39	-	-
	Accr3g00343	846	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	613	625	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr3g00343	Accr-Chr3	3704475	3709596	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr3g00343	472	760	MAP Kinase Kinase Kinase	AT4G08470	28.669	1.43e-23	103

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TTK	Accr3g00343		Pkinase	1.4e-55	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr3g00343	K08866		-	qsa:O6P43_015223	1173.69