Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00342 ATGAGCAAACCCAGAATCCATAGGAAATCCACCAAGCAAGCCACAACAAACCAGAACCAAAAACCGCAGAAATCAGAGAAACAACCCTCTTGGGTAGTGGTAAGAGGCCTATTGACTTGTAGAAATGTTCAAACCCAACCGCAGCAGAAGCAGCCGCAACAAATTCCTGAAGGGAAACAACAACCAAAGAAGAAACAAGAACAGCGAAAGTTGCAGGAAGAAAGAGTCCCAGAAGATCAGAACAGCAAGAAATGCAAGAAGATGAAATGTTCAGGCTCACTTTGTAATAACACAAATATCATGGCAAAGCCTGAAACTGGATGCCCGGATTCGCACAACAAGAAGCCCTCATTGTCTGCATGTAGCAGCAGCAACAATGATTCTACAAGCAGATCCATGAAAGCTCCTCCACGAGAACCCAACGCTGCCGTTTTGGCATCTTCTTCATTATCAGCATCTTCTAGTTCTTCTGTTACTGGGTCTTTCAAGGGAATGCCCTTCAGGAGACTCTCTGGCTGTTATGAGTGCCGAATGGTGGTTGACCCTGTTCTGGGTTTCACCAGAGACCCTTCTCTTCGAAGCAGCATTTGTCCATGCCCAGACTGTGGTGAGATCTTCACAAAAACTGAAAGCTTGGAGCTTCATCAGGCTGTTAAACATGCGGTATCGGAGCTGGGACCTGAGGATACAAGCAAGAATATAGTAGAAATCATATTCCATTCAAGCTGGCTAAAGAAACAGTCCCCAGTCTGCAAAATAGATCGCATCCTCAAAGTCCAAAACACCCAGAAGACGATATCCAAATTCGAAGAATACAGAGATTCCATTAAAACTAAAGCCACAAACCTCCCCAAGAAACACCCACGTTGCATAGCAGATGGCAACGAGCTTCTCAGGTTTCACGCCACCACCTTCGTGTGCTCTCTGGGCCTAAACGGTTCGTCCAACCTCTGCAACTCAATATCACAGTGCAACGTTTGCAACATAATCAAGAATGGGTTTAAGGTGGCGGCAGAAACGACGAACGGAGAAAACGATGGGAAGGGAATATTGACGACGGCGACGAGCGGGAAGGCACACGACAGAGCGGTAGTTTCAGGGGACGAGAAAAATGACGTCAGGGCGATGCTGGTTTGTCGAGTAATAGCTGGCAGGGTGAAGAAGAATATGGAAGGAAGTATGGAAGAGTATGATTCGATTGGAGGTGGTGTCGGGGCGTATTCTAATTTGGACGAGTTGTATGTGTTCAATCCAAGAGCTATATTGCCTTGTTTTGTTGTGATCTACAGAGGTTTTTGA 1299 0.4611 MSKPRIHRKSTKQATTNQNQKPQKSEKQPSWVVVRGLLTCRNVQTQPQQKQPQQIPEGKQQPKKKQEQRKLQEERVPEDQNSKKCKKMKCSGSLCNNTNIMAKPETGCPDSHNKKPSLSACSSSNNDSTSRSMKAPPREPNAAVLASSSLSASSSSSVTGSFKGMPFRRLSGCYECRMVVDPVLGFTRDPSLRSSICPCPDCGEIFTKTESLELHQAVKHAVSELGPEDTSKNIVEIIFHSSWLKKQSPVCKIDRILKVQNTQKTISKFEEYRDSIKTKATNLPKKHPRCIADGNELLRFHATTFVCSLGLNGSSNLCNSISQCNVCNIIKNGFKVAAETTNGENDGKGILTTATSGKAHDRAVVSGDEKNDVRAMLVCRVIAGRVKKNMEGSMEEYDSIGGGVGAYSNLDELYVFNPRAILPCFVVIYRGF 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00342 432 MobiDBLite consensus disorder prediction 107 160 - -
Accr3g00342 432 MobiDBLite consensus disorder prediction 60 83 - -
Accr3g00342 432 MobiDBLite consensus disorder prediction 112 135 - -
Accr3g00342 432 MobiDBLite consensus disorder prediction 11 27 - -
Accr3g00342 432 ProSiteProfiles Zinc finger C2H2 type domain profile. 197 225 IPR013087 -
Accr3g00342 432 MobiDBLite consensus disorder prediction 144 160 - -
Accr3g00342 432 Gene3D - 221 430 - -
Accr3g00342 432 MobiDBLite consensus disorder prediction 39 59 - -
Accr3g00342 432 ProSitePatterns Zinc finger C2H2 type domain signature. 197 220 IPR013087 -
Accr3g00342 432 SUPERFAMILY ADP-ribosylation 222 431 - -
Accr3g00342 432 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 83 429 - -
Accr3g00342 432 MobiDBLite consensus disorder prediction 1 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00342 Accr-Chr3 3687637 3689042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00342 162 430 C2H2 Transcription Factor Family AT1G75710 52.218 8.48e-100 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr3g00342 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00342 - - qsa:O6P43_015222 589.726