Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00340 ATGTCTAACGCCCCCAGACTCACCGGCACTGTCAAGTGGTTCAATGCCTACAAGGGATTCGGATTCATCGCACCCGATGACGGTGGCGATGATCTCTTTGTCCACCACACTTCCATCCGATCCCACGGTTATCGCACCCTGTTCGAGGGTCAGCCCATCGAGTTCCTTCTCGATTACGCCCAAGACGGACGAACCAAAGCTGTTGACGTCACCGCTCTCCTAAGATATCGTCCTTCTGACGGCGGCGGAAGAGGGTTTTATGGTGGCAGAGGTAGAGGCGGTAGATATGGCGGACGCTATGCTGGCGGGAACACTCGCGGTGATCCTTACCGGTATGGCCGGAGAGGTGGAGGCTACGGTGGTGGCAGATACAGCGAGGGCATCGAGTGTTACAATTGTGGCCGCGTTGGTCATTTGGCAAGAGACTGTTATCATGGTGCTGGTGGTGGCACTCGCAGACGCGGGGGTGGTAATAGTGGCGGCGGAGGCGGAGTGTGCTTTCATTGCGGGGAGGAAGGGCATTTTGCGAGGGAATGTCCTACTGTCGATAAATGA 555 0.5658 MSNAPRLTGTVKWFNAYKGFGFIAPDDGGDDLFVHHTSIRSHGYRTLFEGQPIEFLLDYAQDGRTKAVDVTALLRYRPSDGGGRGFYGGRGRGGRYGGRYAGGNTRGDPYRYGRRGGGYGGGRYSEGIECYNCGRVGHLARDCYHGAGGGTRRRGGGNSGGGGGVCFHCGEEGHFARECPTVDK 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00340 184 Pfam 'Cold-shock' DNA-binding domain 8 72 IPR002059 GO:0003676
Accr3g00340 184 SMART c2hcfinal6 165 181 IPR001878 GO:0003676|GO:0008270
Accr3g00340 184 SMART c2hcfinal6 129 145 IPR001878 GO:0003676|GO:0008270
Accr3g00340 184 CDD CSP_CDS 8 71 IPR002059 GO:0003676
Accr3g00340 184 PRINTS Cold shock protein signature 45 63 IPR002059 GO:0003676
Accr3g00340 184 PRINTS Cold shock protein signature 30 39 IPR002059 GO:0003676
Accr3g00340 184 PRINTS Cold shock protein signature 9 24 IPR002059 GO:0003676
Accr3g00340 184 ProSitePatterns Cold-shock (CSD) domain signature. 20 39 IPR019844 -
Accr3g00340 184 SUPERFAMILY Retrovirus zinc finger-like domains 122 181 IPR036875 GO:0003676|GO:0008270
Accr3g00340 184 Gene3D - 120 158 - -
Accr3g00340 184 Gene3D - 159 184 - -
Accr3g00340 184 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 181 - -
Accr3g00340 184 ProSiteProfiles Zinc finger CCHC-type profile. 130 143 IPR001878 GO:0003676|GO:0008270
Accr3g00340 184 SMART csp_8 8 73 IPR011129 GO:0003676
Accr3g00340 184 ProSiteProfiles Cold-shock (CSD) domain profile. 6 72 IPR002059 GO:0003676
Accr3g00340 184 ProSiteProfiles Zinc finger CCHC-type profile. 166 180 IPR001878 GO:0003676|GO:0008270
Accr3g00340 184 SUPERFAMILY Nucleic acid-binding proteins 4 72 IPR012340 -
Accr3g00340 184 Gene3D - 1 71 IPR012340 -
Accr3g00340 184 Pfam Zinc knuckle 165 180 IPR001878 GO:0003676|GO:0008270
Accr3g00340 184 Pfam Zinc knuckle 129 143 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00340 Accr-Chr3 3666117 3666671 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Accr3g00340 CSD 2.5e-21 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00340 - - gmx:100815773 176.407