Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00329 ATGTCTCTCAGCCCTCCTCGCCCTACAATAATAACCTATCAGCTCTACTGGTGCTTCCGATGTAATCGTCTGGTCAGGCTCTCCCCCTCCCACCTTATCTGCCCTCGCTGTTTTGAAAGCTTCCTCTGTGAATTCAACTTTCCAACTCCCTCTCTCCTCGCCCTCCCTTCCCCTCAAGCTCGTTTGCTCGATGCCCTCTCTCTCATGCTCCACCCTCCCCAACGCCAAGGCCCAACTCCTGACAACCCACGTGTCGAAATTCCGGTTCGTCGCATAATACGTCCTCGACATCATAGTTTTGATGATGCCAGGGTTGGTGCTTTCGACCGAGAACCAGAGACCCAACCTCGTCATCGGACTTGGGCTATTGTTCCCCCAGGTGACCGTTCCAACTCGTTCGAACGGATTCCTCGGCTGCAGGATCCAACCCCACGACGGACTGATCCAAGAGACTACTTTTTCGGGCCAGGGTTGGATGAACTGATTGAGCAACTCACGGAAAATGACCGGCAAGGCCCGCCTCCGGCGCCAGACAGAGCTGTCGAAGCGATTCCAACAGTGAGAATAATGGACAGCCATTTGAAGGAGAACCCTCATTGCCCTGTTTGTCAGGAGGAGTTTGAGGTGGGTGGGGAAGCAAGGGAGTTGGCCTGCAACCATATATATCATTCTGATTGCATCGTGCCATGGCTCAGGCTCCACAATTCTTGCCCCGTTTGCCGCCAGAAGGTGACCGTGCCTTCTGACTACACCGACTCAAGCGACGGTGGCGGTGGCAGGGTGCGGCGGTGTTTGAGGTGGACTCAGTTGGCTTTACTTTGGCCTTTCCATGGAAGGTTCCGACGCGTTAATCCTGAACGCTAG 864 0.5475 MSLSPPRPTIITYQLYWCFRCNRLVRLSPSHLICPRCFESFLCEFNFPTPSLLALPSPQARLLDALSLMLHPPQRQGPTPDNPRVEIPVRRIIRPRHHSFDDARVGAFDREPETQPRHRTWAIVPPGDRSNSFERIPRLQDPTPRRTDPRDYFFGPGLDELIEQLTENDRQGPPPAPDRAVEAIPTVRIMDSHLKENPHCPVCQEEFEVGGEARELACNHIYHSDCIVPWLRLHNSCPVCRQKVTVPSDYTDSSDGGGGRVRRCLRWTQLALLWPFHGRFRRVNPER 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00329 287 SMART ring_2 200 240 IPR001841 -
Accr3g00329 287 SUPERFAMILY RING/U-box 181 248 - -
Accr3g00329 287 Pfam Ring finger domain 199 241 IPR001841 -
Accr3g00329 287 FunFam E3 ubiquitin-protein ligase RING1-like 164 247 - -
Accr3g00329 287 ProSiteProfiles Zinc finger RING-type profile. 200 241 IPR001841 -
Accr3g00329 287 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 130 243 - -
Accr3g00329 287 MobiDBLite consensus disorder prediction 111 151 - -
Accr3g00329 287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 247 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00329 Accr-Chr3 3549038 3549901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00329 125 276 C3H Transcription Factor Family AT1G68180 36.129 6.70e-28 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00329 K11982 - qsa:O6P43_015206 309.301