Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00315 ATGGCGCATCTCACCACCGGTTCACCCCTTTCTCGTAGCATAGTTCGTGCTTTCTTAGACTTCCTCAACTCAGTTGAACCGGCCCCTGGCGCTGATTTAGAAGGGCTTGAGGTTGCTAGGGAGTGTTTGACAGAGGTGTTTAAGCTTAACACATCTCCGACAGATGTTCATGCAAAATCTGTTTCTTTGGTCGACATATTCAAGTCCCTTGAATCTAGCAAGCAATGCGAAGCTAGTCAGTCAGATGTTGGTAAACAACCAGATGACATGGATGCATCGGGTTCATTCACTTCCCACAATGCTGATCATAGACAAAAACATTCCGAGGATGAAGATTGGACTCGAAGGTCTTGCACATTTGGAGTATCCAAAGATGAATTGTGTGGGCAATTCTTTAATGCTCTGGAGAAAGTCCACTTCTTTAGGACAAATCCTGATGGAACTGATGACCCAGTGCAACTGGAGAAAGCATCTCATATATTTAATGCTGCTGTAATGGAGATGGAAAGATCTGAGTGTCAGGAGTTTAGTTTGAAGAACATGGCTGAATTGCTGAAATCACAAGGTAATAAGGCCATGCAATCAAAGAAATACCCTGATGCGATTGATTTGTATACTTGTGCTATTGCACTTTGTGAAGAGAATGCTGTTTACTACTGCAACAGGGCAGCTGCTTACACTCAGATCCACAAATATACAGAAGCAATTCAAGACTGTCATAAATCTATTGAGATTGATCCGAACTATAGCAAGGCATACAGCCGACTGGGTTTAGCATATTATGCTCAGGGAAATTACGGAGATGCAATCAATAAAGGGTTTAGGAAAGCCTTGCTATTGGATCCAAGTAATGAGTCGATTAAAGAAAATATACGGGTTGCTGAGCAAAAATTGGTAGAAGAGCAACATCGTGCAGATCACAGCCAGGATTCAAGATCATCTCAAGAGTCTCATAACCAGTCCACACGAGGGTCAAGAGGTAATGCAGGCCCACCGCCGTTAAACTCAATGTCGTTTAATGCCAACGATCTTGCAAGCATGTTTATGAACATAGCCGCAAACACTGCGAATGCGCATCAAGGACAGCATCCCCAGGAACGGCAAGGAGAAGATAGCGACACCAATTCATCTGATGAACCTGAAATAAGAATCGGGAGCAATATCAATTTAAACTTTAACCAAATGCCCGAGGACTTGTCGGGGGCTTTCAGATCTGTGATGGAAATGTTATCTGGGGCAGCACCTCCAGGCCGTGGGCAACAAGAAGACCATTTCAATGGAAGAACTGCGCCGAACTAG 1299 0.4388 MAHLTTGSPLSRSIVRAFLDFLNSVEPAPGADLEGLEVARECLTEVFKLNTSPTDVHAKSVSLVDIFKSLESSKQCEASQSDVGKQPDDMDASGSFTSHNADHRQKHSEDEDWTRRSCTFGVSKDELCGQFFNALEKVHFFRTNPDGTDDPVQLEKASHIFNAAVMEMERSECQEFSLKNMAELLKSQGNKAMQSKKYPDAIDLYTCAIALCEENAVYYCNRAAAYTQIHKYTEAIQDCHKSIEIDPNYSKAYSRLGLAYYAQGNYGDAINKGFRKALLLDPSNESIKENIRVAEQKLVEEQHRADHSQDSRSSQESHNQSTRGSRGNAGPPPLNSMSFNANDLASMFMNIAANTANAHQGQHPQERQGEDSDTNSSDEPEIRIGSNINLNFNQMPEDLSGAFRSVMEMLSGAAPPGRGQQEDHFNGRTAPN 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00315 432 ProSiteProfiles TPR repeat profile. 216 249 IPR019734 GO:0005515
Accr3g00315 432 MobiDBLite consensus disorder prediction 379 393 - -
Accr3g00315 432 SUPERFAMILY TPR-like 181 295 IPR011990 GO:0005515
Accr3g00315 432 SMART tpr_5 216 249 IPR019734 GO:0005515
Accr3g00315 432 SMART tpr_5 182 215 IPR019734 GO:0005515
Accr3g00315 432 SMART tpr_5 250 284 IPR019734 GO:0005515
Accr3g00315 432 MobiDBLite consensus disorder prediction 408 432 - -
Accr3g00315 432 Gene3D Immunoglobulin FC, subunit C 7 74 - -
Accr3g00315 432 MobiDBLite consensus disorder prediction 364 378 - -
Accr3g00315 432 MobiDBLite consensus disorder prediction 301 340 - -
Accr3g00315 432 MobiDBLite consensus disorder prediction 77 110 - -
Accr3g00315 432 Gene3D Tetratricopeptide repeat domain 177 338 IPR011990 GO:0005515
Accr3g00315 432 Coils Coil 284 304 - -
Accr3g00315 432 MobiDBLite consensus disorder prediction 357 393 - -
Accr3g00315 432 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 177 327 - -
Accr3g00315 432 PANTHER LD24721P 6 413 IPR047150 -
Accr3g00315 432 Pfam Tetratricopeptide repeat 216 249 IPR001440 GO:0005515
Accr3g00315 432 MobiDBLite consensus disorder prediction 314 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00315 Accr-Chr3 3416030 3422443 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00315 181 278 U-box Gene Family AT3G07370 35.714 6.00e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00315 K16365 - qsa:O6P43_019753 560.836