Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00288 ATGGAAAGGCAGCGTGAGCAAGATAGTAAAGCAGCTCTCTCTTCGAAGGTCGTAGAATTGGGAAGCAATCGTATAGCACCAGCACCTAATGTTGATGCTGCTTTCTCCACTCATAAGAAACCTAGGTGGAGGGACTTTCTATCCTATGTTGGTCCTGGTTTTCTGGTTTCCATGGCTTACCTTGATCCTGGAAACTTGGAAACTGATTTGCAAGCTGGAGCCAACCACGGATTTGAGCTGCTATGGGTGATACTTGTTGGGCTACTCTTTGCTCTCATTATTCAGTCATTGGCGGCAAATCTTGGCGTAACAACAGGGAAGCACCTTTCAGAGTTATGTAAAGTGGAGTATCCTTCGCGGGTAAAGTACTGCTTGTGGTTGCTGGCTGAGATTTCTGTCATAGCAGCAGATATAGCCGAAGTTGTTGGCACAGCCTTTGCACTCAACATACTGTTCCACATCCCACTATGGGCAGGAGTTCTCTTGACCGGCTTCTCCACTCTTTTGCTTCTTGGTCTCCAGAGATTTGGCGTTAGGAAGCTGGAATTGCTGATATCAATTCTGGTATTTATAATGGGGGGATGCTTCTTTGTGGAAATGGGCTATGTAAAACCATCAGCTTCTGGTGTATTGAAAGGAATGTTCGTCCCAAAACTAAGTGGCGATGGAACCACTGCTGACGCCATTGCCCTTTTTGGAGCACTCATTATGCCGCACAACCTCTTTCTCCACTCTGCTCTTGTGCTCTCTAGAAAAGTACCCACCTCTGTCCGTGGCATCAATGACGCATGCAGATACTTTCTAATAGAAAGTGGGTTTGCTCTGTTTGTAGCATTTCTAATAAACGTAGCAATAGTTTCAGTATCAGGCACGGTATGCTCTGCAAATAATCTTTCAGCTCAAGATACAGAAAGATGCGATGATCTCTCCCTTGATTCTGCATCTTATCTTCTCAAGAATGTGTTGGGAAAGTCCAGCTCAACAGTTTATGCCATAGCACTTTTGGCCTCTGGACAAAGCTCCACTATCACTGGAACCTATGCTGGCCAGTACATTATGCAGGGATTCTTGGATTTGAGGATGAAAAAATGGATACGGAATTTGATGACTAGAAGTGTTGCCATAATACCTAGTCTTGTTGTTGCTGTTATTGGCGGACCTTCTGGTGCAAGCCGCCTTATTATCATTTCCTCGATGATACTTTCGTTTGAGCTGCCATTTGCTTTGATTCCATTGCTCAAGTTTAGCAGCAGCAGCCCCAAGATGGGACCTCACAAGAATTCTATAATTATCATTTTGATTTCATGGATCCTAGGATTTGGAATCATCGGCATAAACGTGTACTACCTAAGCACAGGTTTTGTGGATTGGTTAATTCACAGCAGCCTGCCAAAAGTGGTAAACGTATTCATTGGGATCATAGTATTCCCTCTTATGGCCATTTATGTTGCTGCCGTTATCTACCTCACCTTCAGAAAAGACAATGTCGAAACATTCATAGATACTCAGAACGATTCTCAAGTGCCAACCCACATGGAATTGGGTCCAATTGCTTTTAGAGAAGATTTAAGGGACATCCAACTTCCACATTAA 1593 0.4382 MERQREQDSKAALSSKVVELGSNRIAPAPNVDAAFSTHKKPRWRDFLSYVGPGFLVSMAYLDPGNLETDLQAGANHGFELLWVILVGLLFALIIQSLAANLGVTTGKHLSELCKVEYPSRVKYCLWLLAEISVIAADIAEVVGTAFALNILFHIPLWAGVLLTGFSTLLLLGLQRFGVRKLELLISILVFIMGGCFFVEMGYVKPSASGVLKGMFVPKLSGDGTTADAIALFGALIMPHNLFLHSALVLSRKVPTSVRGINDACRYFLIESGFALFVAFLINVAIVSVSGTVCSANNLSAQDTERCDDLSLDSASYLLKNVLGKSSSTVYAIALLASGQSSTITGTYAGQYIMQGFLDLRMKKWIRNLMTRSVAIIPSLVVAVIGGPSGASRLIIISSMILSFELPFALIPLLKFSSSSPKMGPHKNSIIIILISWILGFGIIGINVYYLSTGFVDWLIHSSLPKVVNVFIGIIVFPLMAIYVAAVIYLTFRKDNVETFIDTQNDSQVPTHMELGPIAFREDLRDIQLPH 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00288 530 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 44 420 IPR001046 GO:0016020|GO:0030001|GO:0046873
Accr3g00288 530 PRINTS Natural resistance-associated macrophage protein signature 178 199 IPR001046 GO:0016020|GO:0030001|GO:0046873
Accr3g00288 530 PRINTS Natural resistance-associated macrophage protein signature 153 172 IPR001046 GO:0016020|GO:0030001|GO:0046873
Accr3g00288 530 PRINTS Natural resistance-associated macrophage protein signature 366 383 IPR001046 GO:0016020|GO:0030001|GO:0046873
Accr3g00288 530 PRINTS Natural resistance-associated macrophage protein signature 338 357 IPR001046 GO:0016020|GO:0030001|GO:0046873
Accr3g00288 530 PRINTS Natural resistance-associated macrophage protein signature 228 251 IPR001046 GO:0016020|GO:0030001|GO:0046873
Accr3g00288 530 PRINTS Natural resistance-associated macrophage protein signature 125 151 IPR001046 GO:0016020|GO:0030001|GO:0046873
Accr3g00288 530 PRINTS Natural resistance-associated macrophage protein signature 398 417 IPR001046 GO:0016020|GO:0030001|GO:0046873
Accr3g00288 530 Pfam Natural resistance-associated macrophage protein 67 428 IPR001046 GO:0016020|GO:0030001|GO:0046873
Accr3g00288 530 Hamap Divalent metal cation transporter MntH [mntH]. 30 454 IPR001046 GO:0016020|GO:0030001|GO:0046873
Accr3g00288 530 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 24 496 IPR001046 GO:0016020|GO:0030001|GO:0046873
Accr3g00288 530 NCBIfam Nramp family divalent metal transporter 51 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00288 Accr-Chr3 3129029 3132152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00288 21 530 Inorganic Solute Cotransporters AT1G15960 58.541 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00288 K21398 - gmx:100787785 775.778