Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00280 ATGGGCTCGTGTGGGAAATCGAGTATACTCGATGACGCCTCAAGCGGGTCTGTTATTGAGCAGCAATCATGCGCAGAATTTCCAGTGCAGTCTATTCCTTTGCAGCGGTCCTATCCAGTAGTAAATTGCAATGCATTGGACTCTAATGTCGAGCGCTCCAATACGATGGAGGGATGTATGAATAGGTCTAGAGAGGTCCACACTGGCTCTGCGAGCACCATTGATGTCCTAGAGATGTTCAGAGATTCATTGTCGATGGCGAACAAAAATGAAAGTACTGATAGGTTACAATGCTCGTGTACAGTAGAAACTTGCAATGCGGTGGACTCTAATGTTGAGCACTCCAATATGATGATGGAAGGTTGTATGGATTTGTCCGGAGAGATTCACACCAGGTCTTCAAGCTCCATTGGTGTTCCAGAGATGTCCAGAGATTTATTGTTGATGGCGGAAAAAGGTGAAAATACTGACAATTTACAACGGTCCTGTCCAATTGTTACTAGCAATGTGTTGGACTCTAATGTTGAGCATTCCGATATGATGGAATGTTGTATGAATTCATCTAGAGAGGTCCATACAGGGTCTGTAAGCCCCGTTGGTGTTACAGAGGTGCCCAAAGATTCATTGATGATGGTGGATAAAAATGAAAATACTGGTACGTTAGAAGAGTCCTGTCCAGTAGTAACTTCACTAACTTGCAATGTGTTGGACCCTAGTGTTGATCACTCCAATATGATGGAAGGTCGTGAGAATTTGTCTAAAGAGGTCCACTCTGGGCCTGCAAGCCCCATTGATGCTTCAGAGATAACCAGAAATTCATTGATCGAGAACAAAAGTGAAAATACTGATATTTTACAACAGTCCTGTCTAGTAGCTACTAGCAATGTGTTGGACTCTAATGTTGTGCACTCCAACCTGATGGAAGGTTGTATGAATTCAACTAGAGAGGTGGCAAGCTCCATTGATGCTCCTGTGGTAATCAGAGATTCATTGTTGATGGAGAACAAAAGTGAAAATACTGATATTTTACAACAGTCCTGTCGAGTAGTAACTTGCAATGCGTTGGACTCTAATGTTGAGCACTCCAACATGATGGAAGGTTTTATGAATTCATCAAGAGAGGTCCATACAGGGCCTGCAAGCCCTATTGATGTTTCTGAGATGTCCAAAGATTCATTGTTGACAGTGAATAAAAGTGAAACTGAGACGTCACTTTTGAAGAAAACCTCAGAGAAAGATAGCCGGACTTGTCCAAGTGTATTATGTGCGCAAATTGAACTTTCTAATATAGAAATTGTCAAGTTGGTCTCAGAAGGAAAACATTGTGCCAAAGATGGCCTCAAAATGCCATCAGACTTCATACCGACCACTGGTTCACCTAAGGATTGTGTTCATCAGGATGGGCACAAGGATGAGAAGAGCAACATACTCCACTCTGCTGGAGTTTCTTTAGCACTCATGGAAGGTGAAAATGATGCTGGTTTACCAACAGGCTTTGTAGTTTATTGCCACCAACAAAGCAAACAAGAGGATACAATGAGGAATGCTAATCCATTAGTGAAGGGTGTGAAAGAAGGTGATTTGATTTGTGGGATTGAAGCAGATGCCTGCAAGCAGACTCATTCACAGGGCAGTGAAGTACCGACAGATGTTATATATACTGAAGCAGAGGCCATAAGTGATCAGCTGCATGATCAGAAAGATAGTGGTGATGAAAATGGTCCTTATGAAGATTTTGTTGATAAAGAAAGTATCATTGATACGCATGTCCAAGCATTCTCCTCACAATTCCATCAAAGGATCTCGGGGAGTTTGCCTGTAGCTTATTCACCTGGCGAGACTACCCACTCAGAGAAGGGGACTGATAATATTAATACTGATTTTGATGCAGAAGATGTGAAAATTAAGGGAAAAAGCACTGATGTTATGACTGAAATAAATGTTCAAATGATGGACAATAGGCCACAAGATGACAACGCGTGTAAGTTAAATGAAAGTTCATCAAAAACAGATGCCAACTGTACCCTCAGAAAAACGTTTCCTCCTGAATCAGATCTTCCTTCTGTTGACCATGTCAGTATTGGCTCTCCAAAGGACGTATCTGATCTTCTCAAGGAGGCCAATGATTCCACCAATAGTGGCCTTGTGGGCGATTCTGGAGAGGCAGACAGTATTGGGAAAGATATTATACAAGTTGGCTCTCCAAAGGACGTACCTGATCTTCTCAAGGAGGCCAATGATTCCACCAATAGTGGCCTTGTGGGCGATTCTGGAGAGGCAGACAGTATTGGGAAAGATATTATACAAGTTGATTGTACCTCTGAAAGCAATTATTCTGGTAATGCATCCTTGCCTATTCGAAGGAATAGTCGAAGAAGTAAATCTGGTCATAAGACACAGACCAAAAGGGCTTCAAGGAAATGCAAGAACAAAACCAGTGTGCCACTCGTAGGTGGGGATATGAAGATAATTTTGGAGGCTGCTAGAAAGAAAAGAAGTTGTTTCTCTAAACCAGCTCGTTCTTCTATCTGGGGATTGGTTGGAAACATTAATAAGTTTTTTGAACAAGATAATGAGCTTGGAGTTGATGAAGTTATGTGTCAAGGATTGAGGAGGGTGAGAGGTGCCCTTAAAAGTGGCACGAGAAAGAAGAATGGTGCTATTTCTAGCTCATTGAGTTCAATGAAGAAATGCTGTGCTCCAACAACTCGTGTTCGTCTGAAGATTAAGCTGGGGAAAGAAGTTCATTTAAGTTGTTCAGATGTCTTCGTTCCAGAGTTTATGAACAGTGCATGTTCTTCTTCAAATGTGGGCTTTCAAGAAAAAAACAAAAGTGCTGGAGATAAAAGCTCAGAAGAGGTTGCAGAAGGGAAGTCTGAATCTTTAACAAACAGCCCGGATGAGGATGCTCTTTATCTGAATGGACAAATGGCAAATCACCACTTAGAAGCTGCTGCAGCAACAGAAAAGTCAAATGAGGTTGCAGAGGAAGCATGTCATATGATTCCTCCAGAGAGGATGGTTGATACGTTGAGAGAGACTGTTAATGATAAGGGGATGGATCCTGGAACTTCGCCTGATTCAGAAGTGATAAATTCAATTCCTGAAGTCCATGTTGGAGAAAGACATCAACAAGGGTTGCATGATGCTTTTCTTGGTTCTTCTAAAGTGTCTGATTCTCTTGGAGGGGTATCTGGTTGCAGGAGAAGGAAGAAGAAAGACAAAGTTACTTCTTCAAGTAGTTCTATCGTTGAAGATGGCTCAAAAGGACCTTCAAGGAAAAACAAAACTAAGCAATCAAAGAGTCATGGACGTAAAAAGAATTCCAATGACGTGGTTTGCTCCATGAGATTGCATACTTCTACTAGTATGAATACTGTGAGCTACCCAGTATGCCATAAAGAATTATCCAGTGAATCATTGCCCCCATCTGGAGAGATTGAACTTGAAGACTCCACTGAGGCTTTGAAAGTCAAAAGTAGCATGAAAGTTGAGACTACTTGCAGCCCAAATGACAATTATGAGCTTTTGGAATCCCAAGGAATTGATAATTTGCTGCCTTCAACAAGATCCTTAGGTCGTAAACTTCCTAAAAGTCTTACATCTTGTAAAATCATCACCCCCAAATCAAAAGCTTCTGACTCAATGAGCCGGAAAAAGACTGGTAGCAGACATAGGGAGAAGCAGCTCAAACCTATTAAGAAGAGTGAAGTCAATGGAAAAGCCGTCTCTGATAAAGTTATCTTTGAAGCAGAAGATCGTCTGCATGCAGAACATGTTCATGGAAGTTATCAATTGGATGATATTGGAAAAATGAATGCCGGTGACGACAAAGTAGCTGTAAATGGATCCAATTTGGACATGGCAGTTGGTACTGGTTTGGAGCAGCAGCATCCCTCTCCTCATAATGCATGGGTGCGCTGTGATGATTGTCACAAGTGGCGGCGTATTCCTGTTGAGCTAGCAGATCTAATTGAAGAAACAAAGTGCACCTGGACCTGTAAGGATAGCAATGATAAAGCCTTTTCTGATTGCTCCACCCCCCAAGAAAAGTCAAATGCAGAGATCAACGCAGAATTGGGTTTATCAGATGCATCAGGTGATGAAGATGCTTATGAAGGCTGTAAAAATTATAAGAAGTTGGAATATCAACACCCAACAGTTCACCAGGAGTCAACTTTTACCCATATTCTTACTAATGAGTTTCTGCACCGCAGCCGCAAAACGCAGACTATTGATGAGATAATGGTTTGCCATTGCAAACGGTGTTGTGGGGATGAATGCCTAAATCGGATGCTCAACATTGAATGTGTTCAAGGAACCTGCCCATGTGGGGATCTTTGTTCAAATCAGCAGTTCCAGCAACGCAAGTATGCCAGCTTGACATGGTTTAAATGTGGGAAAAAAGGTTATGGGTTGAAGGCAGTTGAGGATATATCTAAAGGGAAGTTTCTTATTGAATATGTTGGGGAGGTGCTTGATATGCATGCTTATGAGGCACGGCAAAGAGAGTATGCTTTCAAGGGCCATCGGCATTTCTACTTCATGACCCTAAATGGCAGTGAGGTGATAGATGCAAGTGCAAAAGGAAACTTGGGACGTTTCATTAATCATAGTTGTGATCCTAATTGCCGTACTGAAAAGTGGATGGTGAATGGTGAAATCTGTATTGGACTTTTTGCGTTGAGGGATATAAAACAGGGTGAAGAGGTGACATTTGATTACAACTATGTAAGGGTTTTTGGTGCTGCTGCCAAAAAATGTTATTGTGGTTCACCTCTATGTCGTGGTTATATAGGTGGTGGTGATCCACTTAATGCTGAAGTCATTGTGCAAGGTGATTCAGATGAGGAATTTCCAGAACCAGTTATGCTTACTGAAGATGGTGAAATTGAAAGAAGTATGCCTAGATCTGATGTCATGCAGGCTGAAAGGAATTTGTCAAAAGACAGAGGTCTAGTTGACAAGTCCAGAAGTGCTCAAGTTCCAGGTAATAATCTGGAGAAAGAGAACTCTATAAACCCATCTCCTGCTATTCCACCACCGCATTGCCCATTAGATGTGGAAGATTCCATTGGCAAATTGCCATCTTCTGACGTGGAAGAAATTTCTCCACAAATGAGGGATGCAAAGAGTAAATCCATGCCTGCTGTACAACAAGTGTTGAAATCAGAGCTTCCTGATGATATTTCTTCCATCCAAATGGAGGCTTCTGCGACACCTATTAGTAAAGCGATATCAAATTTGATTAAGAATAAAAAGGAATCCAAGTTTGAAACAGTTGAAGATAGGCCTGGTTTTCCGAGAACCCATCTGCTTGTGAAAACTTCTCGAGCAAATGCTTCAGTTAAAAAGGGAAAGGTTCATTTTAATCATTCAAATGGCCTCAAAGCTGCAGTAACTGCCAACAGATTGCAGGCAGCACCAAGCAAACCTAAAAAGGTGGCGGAAGGTCTTTCCAATGGCCGTTTTGAAGCAGTTCAGGAGAAACTTAAGGAGTTGTTAGATGAAGATGGAGAAGGAGGAATAAGCAAAAGAAAAGATGCAACCAAAGGCTACTTGAAGCTTCTGCTTCTCACTGTTGCATCAGATGATAGGAATAATGGCGAAGCAATTCAAAGCAATCGAGATCTTTCCATGATCCTTGGTGCCCTTCTGAAAACAAAATCTAGAGCAGTGCTGAATGATATAATTAACAAAAATGGTCTACAGATGTTGCATAACATTATGAAGCAGTACAGACGGGATTTCAAGAAAACTCCAATACTACGGAAGCTTCTTAAGGTCTTGGAGTATCTAGCAGCAAGCAAGATTTTGACATTTGAACACATTAATGGCGGCCCCCCTTGTCATGGAATGGAGAGCTTTAGGGAGTCTATGTTGTCTCTGACGGAGCATGATGACAAACAGGTCCATCAAATTGCTCGAAGCTTTCGGGACAGATGGATTCGTAAACCTTTCAGAAGACACGGCTTTGGGGACCAAGATGATTTTAAGGGAGATTCTCAAAGGAATTTCAACTGCAATAGATTTTCAGCATCACAGAACCATAGGCGGGAGCTAGATGTTAGATCGACGGAAGCAATAGATTGTGTCCTGCAATCAAAACTTGTGACAACTTCAGTAGATGCTGGTGTCCAGGAGGGCTGCTCTGTACCTTCTTTAGATGGGGCTAAAGTTGACGGGACAAAAAGGCGCAAGCGTAAAAGCAGATGGGATCAACCTGCAGAAACCATTTCAAATTCACCATCTAGTCCATCTAAGAAACAAAATGTTGATTCTGGGCTACCAATGCATGCTCATGCAGCTATTGACTCTTTTGATGGAAGTCAAAACATTAATGAGGATTTTCCCCCGGGTTTTTCATGTCCTGTTCAACCTCAATTGCCTTCTTCGAATGCTTCACCTCACCTTGTTGATCCCGCTTTGCAAAATGTGAGCAATTCTGGGTGCCCCCCAGACACAGTAATTGGACATCCAAAGCAGAAATTTAGTTCTTGCATGCCTGTCTCATACGGAATGCCATTATCTTTTGTCCAGCAGTTTGGCACACCTCATGAAATATCAGGGAGTTGGGTCACTGCGCCAGGTGTGCCTTTTTGCCCATTTCCTCCATTGCCCTGCTACCCGCGGGATAATAAAGATTGTCAATCATCTAGCTCTACTAATGCAGCAGCTGTAAATCAGCCTGTTGAAGTTCAGCAACGTGATATGAATGGTCCAGTTGCTTGTTGCTCTGATGATATTACTCCAAGCACAACCGGTACTAGCCCTAAAGACATTGACCTTCCACATGAAGATGATAAACAACTTTATAAACGTTTGAAAGGTTCCTCTTGTGATTTGGGAAGGAAGTACTTTAGGCAGCAAAAATGGAATAATTCAAAAATACATCGACCCTGGTTCAGGAGGAATGCATGGGGATCTAATGGGAATTACACTGCTGGAGGTATATGTAGTGTAAATGTAGGAGATGAACCAAGTGAGTCAAAAGTTGCATATTCTTCAGAGGATGTAATCTGTAGAGCGGAGGAAGGTGACAATCATGTTTGA 7053 0.4195 MGSCGKSSILDDASSGSVIEQQSCAEFPVQSIPLQRSYPVVNCNALDSNVERSNTMEGCMNRSREVHTGSASTIDVLEMFRDSLSMANKNESTDRLQCSCTVETCNAVDSNVEHSNMMMEGCMDLSGEIHTRSSSSIGVPEMSRDLLLMAEKGENTDNLQRSCPIVTSNVLDSNVEHSDMMECCMNSSREVHTGSVSPVGVTEVPKDSLMMVDKNENTGTLEESCPVVTSLTCNVLDPSVDHSNMMEGRENLSKEVHSGPASPIDASEITRNSLIENKSENTDILQQSCLVATSNVLDSNVVHSNLMEGCMNSTREVASSIDAPVVIRDSLLMENKSENTDILQQSCRVVTCNALDSNVEHSNMMEGFMNSSREVHTGPASPIDVSEMSKDSLLTVNKSETETSLLKKTSEKDSRTCPSVLCAQIELSNIEIVKLVSEGKHCAKDGLKMPSDFIPTTGSPKDCVHQDGHKDEKSNILHSAGVSLALMEGENDAGLPTGFVVYCHQQSKQEDTMRNANPLVKGVKEGDLICGIEADACKQTHSQGSEVPTDVIYTEAEAISDQLHDQKDSGDENGPYEDFVDKESIIDTHVQAFSSQFHQRISGSLPVAYSPGETTHSEKGTDNINTDFDAEDVKIKGKSTDVMTEINVQMMDNRPQDDNACKLNESSSKTDANCTLRKTFPPESDLPSVDHVSIGSPKDVSDLLKEANDSTNSGLVGDSGEADSIGKDIIQVGSPKDVPDLLKEANDSTNSGLVGDSGEADSIGKDIIQVDCTSESNYSGNASLPIRRNSRRSKSGHKTQTKRASRKCKNKTSVPLVGGDMKIILEAARKKRSCFSKPARSSIWGLVGNINKFFEQDNELGVDEVMCQGLRRVRGALKSGTRKKNGAISSSLSSMKKCCAPTTRVRLKIKLGKEVHLSCSDVFVPEFMNSACSSSNVGFQEKNKSAGDKSSEEVAEGKSESLTNSPDEDALYLNGQMANHHLEAAAATEKSNEVAEEACHMIPPERMVDTLRETVNDKGMDPGTSPDSEVINSIPEVHVGERHQQGLHDAFLGSSKVSDSLGGVSGCRRRKKKDKVTSSSSSIVEDGSKGPSRKNKTKQSKSHGRKKNSNDVVCSMRLHTSTSMNTVSYPVCHKELSSESLPPSGEIELEDSTEALKVKSSMKVETTCSPNDNYELLESQGIDNLLPSTRSLGRKLPKSLTSCKIITPKSKASDSMSRKKTGSRHREKQLKPIKKSEVNGKAVSDKVIFEAEDRLHAEHVHGSYQLDDIGKMNAGDDKVAVNGSNLDMAVGTGLEQQHPSPHNAWVRCDDCHKWRRIPVELADLIEETKCTWTCKDSNDKAFSDCSTPQEKSNAEINAELGLSDASGDEDAYEGCKNYKKLEYQHPTVHQESTFTHILTNEFLHRSRKTQTIDEIMVCHCKRCCGDECLNRMLNIECVQGTCPCGDLCSNQQFQQRKYASLTWFKCGKKGYGLKAVEDISKGKFLIEYVGEVLDMHAYEARQREYAFKGHRHFYFMTLNGSEVIDASAKGNLGRFINHSCDPNCRTEKWMVNGEICIGLFALRDIKQGEEVTFDYNYVRVFGAAAKKCYCGSPLCRGYIGGGDPLNAEVIVQGDSDEEFPEPVMLTEDGEIERSMPRSDVMQAERNLSKDRGLVDKSRSAQVPGNNLEKENSINPSPAIPPPHCPLDVEDSIGKLPSSDVEEISPQMRDAKSKSMPAVQQVLKSELPDDISSIQMEASATPISKAISNLIKNKKESKFETVEDRPGFPRTHLLVKTSRANASVKKGKVHFNHSNGLKAAVTANRLQAAPSKPKKVAEGLSNGRFEAVQEKLKELLDEDGEGGISKRKDATKGYLKLLLLTVASDDRNNGEAIQSNRDLSMILGALLKTKSRAVLNDIINKNGLQMLHNIMKQYRRDFKKTPILRKLLKVLEYLAASKILTFEHINGGPPCHGMESFRESMLSLTEHDDKQVHQIARSFRDRWIRKPFRRHGFGDQDDFKGDSQRNFNCNRFSASQNHRRELDVRSTEAIDCVLQSKLVTTSVDAGVQEGCSVPSLDGAKVDGTKRRKRKSRWDQPAETISNSPSSPSKKQNVDSGLPMHAHAAIDSFDGSQNINEDFPPGFSCPVQPQLPSSNASPHLVDPALQNVSNSGCPPDTVIGHPKQKFSSCMPVSYGMPLSFVQQFGTPHEISGSWVTAPGVPFCPFPPLPCYPRDNKDCQSSSSTNAAAVNQPVEVQQRDMNGPVACCSDDITPSTTGTSPKDIDLPHEDDKQLYKRLKGSSCDLGRKYFRQQKWNNSKIHRPWFRRNAWGSNGNYTAGGICSVNVGDEPSESKVAYSSEDVICRAEEGDNHV 2350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00280 2350 CDD SET_SETD2 1458 1600 IPR044437 GO:0010452|GO:0046975
Accr3g00280 2350 Pfam AWS domain 1424 1456 IPR006560 GO:0005634|GO:0042054
Accr3g00280 2350 SUPERFAMILY SET domain 1393 1597 IPR046341 -
Accr3g00280 2350 MobiDBLite consensus disorder prediction 1209 1238 - -
Accr3g00280 2350 MobiDBLite consensus disorder prediction 731 758 - -
Accr3g00280 2350 Pfam SET domain 1470 1576 IPR001214 GO:0005515
Accr3g00280 2350 Gene3D SET domain 1362 1608 IPR046341 -
Accr3g00280 2350 FunFam Histone-lysine N-methyltransferase 1364 1615 - -
Accr3g00280 2350 Pfam CW-type Zinc Finger 1305 1351 IPR011124 GO:0008270
Accr3g00280 2350 MobiDBLite consensus disorder prediction 937 968 - -
Accr3g00280 2350 ProSiteProfiles Post-SET domain profile. 1584 1600 IPR003616 -
Accr3g00280 2350 MobiDBLite consensus disorder prediction 1645 1684 - -
Accr3g00280 2350 SMART shorttest3 1413 1458 IPR006560 GO:0005634|GO:0042054
Accr3g00280 2350 MobiDBLite consensus disorder prediction 2059 2074 - -
Accr3g00280 2350 MobiDBLite consensus disorder prediction 1659 1673 - -
Accr3g00280 2350 ProSiteProfiles AWS domain profile. 1413 1457 IPR006560 GO:0005634|GO:0042054
Accr3g00280 2350 MobiDBLite consensus disorder prediction 1050 1113 - -
Accr3g00280 2350 ProSiteProfiles Zinc finger CW-type profile. 1299 1353 IPR011124 GO:0008270
Accr3g00280 2350 MobiDBLite consensus disorder prediction 2126 2141 - -
Accr3g00280 2350 MobiDBLite consensus disorder prediction 2048 2094 - -
Accr3g00280 2350 MobiDBLite consensus disorder prediction 2109 2141 - -
Accr3g00280 2350 SMART set_7 1459 1582 IPR001214 GO:0005515
Accr3g00280 2350 PANTHER SET DOMAIN PROTEINS 805 2078 - -
Accr3g00280 2350 SMART PostSET_3 1584 1600 IPR003616 -
Accr3g00280 2350 MobiDBLite consensus disorder prediction 790 809 - -
Accr3g00280 2350 ProSiteProfiles SET domain profile. 1451 1576 IPR001214 GO:0005515
Accr3g00280 2350 Gene3D - 1302 1361 - -
Accr3g00280 2350 MobiDBLite consensus disorder prediction 2075 2092 - -
Accr3g00280 2350 MobiDBLite consensus disorder prediction 779 812 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00280 Accr-Chr3 3028747 3047015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00280 1442 1599 C2H2 Transcription Factor Family AT2G23740 33.702 5.56e-20 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Accr3g00280 SET 2.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00280 - - pcin:129303139 3496.44