Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00257 ATGGAAGATTCTAATTTTGTGGCAACTGCTTCATCAGCCGGCGATCAGGACTCCAAGACTTGTCCTCGCGGTCACTGGCGGCCCGCCGAGGATGAAAAACTCCGGCAACTTGTCGAACAGTATGGTGCCCAGAACTGGAATTCAATTGCTGAAAAGCTCCAAGGAAGATCAGGGAAAAGTTGCAGATTAAGGTGGTTTAATCAGCTTGATCCGAGGATTAACAGGAGACCATTTACAGAAGAAGAGGAAGAAAGGTTACTGGCAGCTCATCGCATTCATGGGAATAAGTGGGCACTCATAGCGAGGCTTTTCCCTGGTCGAACTGATAACGCTGTGAAGAATCACTGGCATGTTATTATGGCGCGAAAGCAAAGAGAGCAATCCAAGCAGTTAAGTGGCAAGAGATTCTTCCAAGATGTTTACAATAATGATTCTTCCAGTAACACTTCCTCTTCTAATAAAAGATCAAAATCTCAGGATATCTTCAGTTCCCAAACGTTCTTTGACTTCAGGAACATCGATAATAAAAGTAGAATCATCGCAGAATATTCTCCCTCCATCTCCTTGGCATCTTGGAATTTCGCATCCATGGCGAAACAAGGAAAAGACAGTACTACTAATTACATCAACCCCTGCTTTAACATTTACTTCTCAGAATGTTCAAAGGGTTCAGACAGATATCTTTACAGAATTTATCCAAATTCTGCATCATCGTACGGCAGCATTATACCAAACTACAGGAAGTTTAATAATATTCCCGCTGTTCCTTACGGATCATCAGTCATAGGTTGTGATGGTGGTGGTGGTGGTGATGAGAGGAATAGGACAATAAATAAAGACTTGACGAATCTATGCGACATCTCACCCACATTTCCAAAGAAGGGGACTTCCACGGAACAAGAGCAAGCAGACAAACGCAGAGAAGTTCCCTTCATTGATTTTTTGGGCGTGGGTGTGTCATCGTCATGA 969 0.4314 MEDSNFVATASSAGDQDSKTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKQLSGKRFFQDVYNNDSSSNTSSSNKRSKSQDIFSSQTFFDFRNIDNKSRIIAEYSPSISLASWNFASMAKQGKDSTTNYINPCFNIYFSECSKGSDRYLYRIYPNSASSYGSIIPNYRKFNNIPAVPYGSSVIGCDGGGGGDERNRTINKDLTNLCDISPTFPKKGTSTEQEQADKRREVPFIDFLGVGVSSS 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00257 322 CDD SANT 86 117 IPR001005 -
Accr3g00257 322 CDD SANT 26 67 IPR001005 -
Accr3g00257 322 Gene3D - 23 74 - -
Accr3g00257 322 SMART sant 22 71 IPR001005 -
Accr3g00257 322 SMART sant 74 122 IPR001005 -
Accr3g00257 322 Pfam Myb-like DNA-binding domain 26 86 - -
Accr3g00257 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Accr3g00257 322 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Accr3g00257 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 69 IPR017930 -
Accr3g00257 322 MobiDBLite consensus disorder prediction 1 26 - -
Accr3g00257 322 FunFam MYB transcription factor 23 74 - -
Accr3g00257 322 Gene3D - 77 137 - -
Accr3g00257 322 MobiDBLite consensus disorder prediction 1 18 - -
Accr3g00257 322 ProSiteProfiles Myb-like domain profile. 23 69 IPR001005 -
Accr3g00257 322 PANTHER MYB PROTEIN-RELATED 23 156 - -
Accr3g00257 322 FunFam MYB transcription factor 76 153 - -
Accr3g00257 322 SUPERFAMILY Homeodomain-like 22 116 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00257 Accr-Chr3 2712473 2713799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00257 21 129 MYB Transcription Factor Family AT1G17950 84.404 5.39e-67 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr3g00257 Myb_DNA-bind_6 2.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00257 K09422 - gmx:100817328 341.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr4g00301 4 2922575 2923930 Accr3g00257 3 2712473 2713799 CCT
Accr3g00257 3 2712473 2713799 Accr3g00257 3 2712473 2713799 ECH