Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00209 ATGGAAGGCAGGACGTCTGGTTTAGTCTCATTGACAGGTCCTAGTGGAAATACTTGGCGTGTTCAATTGGTTAAGGAGGGGAATGATCTATTCTTCCATCATGGATGGCTAACTTTTTTGGAAGATCATGTTATAGAAGTTGGTGATCTTTTGGTTTTCAGATATGAAGGTCAATTACACTTCACTGTGCTAGTTTTTGATGAAAGAGCATGTGAGAAAGAAGCAGCATTTATATCTAAATGCAGTCAAAATTCATGTGACTTCGACCATATTAATGCACATAAAAGAAATAGGGAGGAGAATTGTTCTTTGAATGTTGTTGCTGAAGATTTGCTGAAGAAAATGAAAGGGACTTCCTTTGAGAGCCAGGAACTCAAGACGAGGATAGTTAGTAAAGATTTATCCTTGCTTGGGTGGGTAAAACCGATTAGTACATTCAGAGAAAAAGGAGAATCCTCCAACGAAGATGCACAACTTAGATGCCCAGCTAGTGATGTTGCTGTGCCTTCTCAAATGGAATATAGCAATGAATGTGAAGAGGCTGCTATGCAGATTGGAAGTGGGAAAGAAGATGATCAATATATGCATAGTAGAGTTTGTCTGTCAAAGTTATCGTCATATGATGAGAAAAGAGTAGCTCAATTGTTTACTTCACCTCTCCCATATTTTGTGAGAATCATGAAAAGCTTCAACATCAGTGGTTCATATACTCTGAATATCCCCTACCAATTTTCAATGGAACATCTTCCAAACTTCAAGATAAAGATCATCCTTCATAATATCAAAGGAGAGCGTTGGACTGTTAATTCTGTGCCAACAACAAGAGTACACACAAGTCACACTCTCTGTGGTGGATGGATGGCTTTTGTTCGTGACAATAACATTAAGGTTGGGGATATCTGCATTTTTGAACTTGTGCATGATTGTGAATTACGTGTCCGCGTTGTTGGAGTAGGAAAAGATGGGATAGACTGTCAGGTTGGAAAAGTAGCTTGTAGTAGGCCTCTTACAGGACATTCCATCAATTCCCATGGATGTTCTCAATATATGCCGATCAAGGGCAAAGTCAATCCAAATTGCAATGGAAATGTTGATCAATCTGATAAAAAGCGGTCTAGGATGGGTCAAGATGCTGTTTTGTCTAAACCTCCCAGAGTGTCAAAGGTTTCTAAGAAGACAGCTGTTCAGAGAAGGCATCGAACTGAAGATGAACTAAGCTCTCAGGCTAAAGCCGGTTTGAGAATGCTGTTTGCACTTGATGAACAAAGAGCCGCTCAGGCCTTCACTTCCTCATTTCCTAGTTTTGTAAAAGTCATGAAAAAGTTCAATGTCAGTGGATCATACACTTTGAAAATCCCATATCAATTCTCTGCAGCGCATCTCCCATCCTACAAAACAGAAGTTGTGCTTCGTAATTTAAGAGGTGAATGTTGGACTGTGAACTCTGTTCCAGACACAAAAGGCAGAGCAGTGCACACGTTTTGTGGGGGATGGATGGCCTTTGTCCGTGATAATGACATCAACTTTGGAGACACATGCATTTTCGAACTAGTTGCTCCGTATGAAATGCAAGTTTATATTTCTGGGATTGGTAAGGAAGGACTTGACCAACAGAACAGGGAACCAAAATCTAATAGATTAGCCGTAGTTTCATGA 1656 0.401 MEGRTSGLVSLTGPSGNTWRVQLVKEGNDLFFHHGWLTFLEDHVIEVGDLLVFRYEGQLHFTVLVFDERACEKEAAFISKCSQNSCDFDHINAHKRNREENCSLNVVAEDLLKKMKGTSFESQELKTRIVSKDLSLLGWVKPISTFREKGESSNEDAQLRCPASDVAVPSQMEYSNECEEAAMQIGSGKEDDQYMHSRVCLSKLSSYDEKRVAQLFTSPLPYFVRIMKSFNISGSYTLNIPYQFSMEHLPNFKIKIILHNIKGERWTVNSVPTTRVHTSHTLCGGWMAFVRDNNIKVGDICIFELVHDCELRVRVVGVGKDGIDCQVGKVACSRPLTGHSINSHGCSQYMPIKGKVNPNCNGNVDQSDKKRSRMGQDAVLSKPPRVSKVSKKTAVQRRHRTEDELSSQAKAGLRMLFALDEQRAAQAFTSSFPSFVKVMKKFNVSGSYTLKIPYQFSAAHLPSYKTEVVLRNLRGECWTVNSVPDTKGRAVHTFCGGWMAFVRDNDINFGDTCIFELVAPYEMQVYISGIGKEGLDQQNREPKSNRLAVVS 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00209 551 SUPERFAMILY DNA-binding pseudobarrel domain 216 317 IPR015300 -
Accr3g00209 551 SUPERFAMILY DNA-binding pseudobarrel domain 428 529 IPR015300 -
Accr3g00209 551 Gene3D - 1 71 IPR015300 -
Accr3g00209 551 SMART B3_2 435 533 IPR003340 GO:0003677
Accr3g00209 551 SMART B3_2 5 69 IPR003340 GO:0003677
Accr3g00209 551 SMART B3_2 223 319 IPR003340 GO:0003677
Accr3g00209 551 Pfam B3 DNA binding domain 435 519 IPR003340 GO:0003677
Accr3g00209 551 Pfam B3 DNA binding domain 5 67 IPR003340 GO:0003677
Accr3g00209 551 Pfam B3 DNA binding domain 227 314 IPR003340 GO:0003677
Accr3g00209 551 SUPERFAMILY DNA-binding pseudobarrel domain 5 74 IPR015300 -
Accr3g00209 551 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 2 320 IPR044837 -
Accr3g00209 551 CDD B3_DNA 221 315 IPR003340 GO:0003677
Accr3g00209 551 CDD B3_DNA 1 67 IPR003340 GO:0003677
Accr3g00209 551 ProSiteProfiles B3 DNA-binding domain profile. 435 531 IPR003340 GO:0003677
Accr3g00209 551 Gene3D - 420 530 IPR015300 -
Accr3g00209 551 Gene3D - 205 319 IPR015300 -
Accr3g00209 551 ProSiteProfiles B3 DNA-binding domain profile. 223 319 IPR003340 GO:0003677
Accr3g00209 551 CDD B3_DNA 433 527 IPR003340 GO:0003677
Accr3g00209 551 ProSiteProfiles B3 DNA-binding domain profile. 1 69 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00209 Accr-Chr3 2227719 2230269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00209 9 317 B3 DNA Binding Superfamily AT3G18990 24.465 1.73e-15 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Accr3g00209 B3 7.6e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00209 - - pcin:129303869 986.867