Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00190 ATGGCAAGCAGTTTTGGGGAATCAACGAGCAGATCACCTCCAAGCCCTTCCTACTCCAGCAACAATAGTAACAGCGATGCCGGCAATTTTGAATGCAACATATGCTTTGACTTGGCACAAGACCCTATTATTACTTTATGTGGTCATCTTTTCTGTTGGCCTTGCCTTTACAAATGGCTTCACTTTCACTCACAGTCTCGAGAATGCCCAGTGTGTAAGGCTCTCATCGAGGAGGAGAAATTGGTCCCCTTATATGGGAGGGGTAAGTCCTCATCTGACCCAAGGTCGAGGTCTGTTCCTGGCATGAACATACCACATCGTCCATCAGGTCAGCGACCTGAAACTGCCCCACCACCTGAATCAAACCACTTTCCTCAACATGGGATTGGATTCACGGGTGGGTTGGGAGGCTTTGCTCCGATGGCCACCACAAGATTTGGGAATTTTACATTCTCCACAGGATTTGGTGGTTTTATTCCATCATTTTTTAACTTTCAACTGCATGGATTTCATGATGGAGTTATGCATGGTAATCCAACTGGTTTTCACTACGGATTTCCTAATTCTTTTCATGGTGGCCATGCTCATGGGTATTATCATCGTCATCCAGGTCAAGGGCAACAAGATTTTTATCTAAAGAGGATTCTTATGCTTGTTGGTTTTTGTGTTTTTCTTGCTCTTATTTGGCAATAG 693 0.4444 MASSFGESTSRSPPSPSYSSNNSNSDAGNFECNICFDLAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKALIEEEKLVPLYGRGKSSSDPRSRSVPGMNIPHRPSGQRPETAPPPESNHFPQHGIGFTGGLGGFAPMATTRFGNFTFSTGFGGFIPSFFNFQLHGFHDGVMHGNPTGFHYGFPNSFHGGHAHGYYHRHPGQGQQDFYLKRILMLVGFCVFLALIWQ 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00190 230 SMART ring_2 32 72 IPR001841 -
Accr3g00190 230 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 14 226 IPR045103 GO:0005783|GO:0006511|GO:0061630
Accr3g00190 230 Pfam Zinc finger, C3HC4 type (RING finger) 32 72 IPR018957 GO:0046872
Accr3g00190 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 86 IPR013083 -
Accr3g00190 230 MobiDBLite consensus disorder prediction 1 22 - -
Accr3g00190 230 CDD RING-HC_AtRMA-like 30 74 - -
Accr3g00190 230 MobiDBLite consensus disorder prediction 86 123 - -
Accr3g00190 230 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 16 86 - -
Accr3g00190 230 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Accr3g00190 230 ProSiteProfiles Zinc finger RING-type profile. 32 73 IPR001841 -
Accr3g00190 230 SUPERFAMILY RING/U-box 29 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00190 Accr-Chr3 2055259 2055951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00190 30 213 C3H Transcription Factor Family AT1G19310 65.608 8.48e-85 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00190 K10666 - rcu:8260936 358.992