Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00154 ATGGCTGAGGTGCTAGATAATGACACTCTTGCAAGGGACAAGCCTTCCACTGAAAAGGACATTTCTGACGAGTTAGATCTGAAAATACAGAAGTACCTGAGAGGAGAAGGTGGGAATTTGGAGGTTTTGACAGACAAAAAACTGAAGGGTCAACTTTCTGTTAGAGAAGAGTTATATAGTAAATCTGCTAAAGTTGCTGCCAAGGCGGATAAGTGGCTTGTGCCCAGTGAGGGAGGTTATCTAGAGGCTGAAGGCATAGAGAAGACATGGAGGATCAAACAAGAGGCAATAGCTAAAGAAGTAGATATCTTAAGCTCAAGAAACCAATATGATATTGTTTTACCAGAACTTGGTCCTTACGCTTTGCAATTTACTTCAAGTGGCCGTTACATGGCTCTTGGAGGGCGTAAGGGCCATTTGGGAATTGTGGACTTGATGAATATGAACCTAATCAAAGAGTTTCAGGTTAGAGAGACAGTCCGTGATGTGACATTTTTGCATAATGAGCTGTTTTTTGCTGCTGCACAGAAAAAGTATACTTACATCTATGACCGTCATGGTACTGAGCTTCACTGCCTTAAGGAACATGGTCCTGTGTTAAGGCTTCAGTTTCTAAAAAATCACTTCCTTCTGGCTTCAATAAACAAGTTCGGGCAGCTTCATTATCAGGATGTTACGACAGGTGCAATGGTTGGTAATTTTCGAACTGGTTTAGGTCGTACTGATGTGATGCAAGTGAACCCCTTCAATGGGGTTGTTGCTTTGGGTCATTCAGGCGGTACGGTCACAATGTGGAAGCCTACTAGTTCAGCTCCTCTTGTCAAGATGTTGTGTCATCATGGTCCTGTCTCAGCTCTGGCATTTCACTCAAATGGCCACTTAATGGCCACAGCTGGAAAAGACAAAAAAATAAAGCTTTGGGACTTGAGAAAATATGAGGTTTTCCAGACACTACATGGCCACGCCAACACGTTGGATTTTAGTCAAAAAGGACTCCTTGCATATGGTACTGGATCTTCTATACAGGTTCTGGGTGATCTTTCTGGTTCGCAGAATTATTCGAGATATATGACTCATTCCATGGTTAAAGGTTACCAAATATCAAAGTTAATGTTTCGACCATATGAAGATGTTCTGGGCATAGGGCATTCCATGGGTTGGTCCAGCATTCTTATTCCAGGATCAGGAGAACCTAACTTCGATACATGGGTGGCTAATCCATTTGAAACATCCAAACAGAGGAGAGAGAAAGAAGTTCGCTCACTGCTGGATAAGCTACCGCCTGAGACGATCATGTTGGACCCAAGCAAAATCGGTACAGTGAAGCCTGCACAGAAAGAGAAGAAGCCGAAGAAGGAGAGGGAGGCAGATATAGATGCTGCCGTTGAAGCTGCCAAGGACATCAAAATGAAGAAAAAAACTAAAGGAAGAAGTAAACCAAGCAAGAAGGTGAAGAAAATGAAGGAAGCAATTGAGAAGGTGAAGAGGCCTTTCTTGGAAGAAAAAATGAAGGAGGAAGCAATTTCAAGAAAGAAACGAAAAATCAGCGAGGAAGTCAGTTTACCAAAATCTTTAAAGAGGTTTGCTGGTAAAAAGCTAGCAATATGA 1608 0.4229 MAEVLDNDTLARDKPSTEKDISDELDLKIQKYLRGEGGNLEVLTDKKLKGQLSVREELYSKSAKVAAKADKWLVPSEGGYLEAEGIEKTWRIKQEAIAKEVDILSSRNQYDIVLPELGPYALQFTSSGRYMALGGRKGHLGIVDLMNMNLIKEFQVRETVRDVTFLHNELFFAAAQKKYTYIYDRHGTELHCLKEHGPVLRLQFLKNHFLLASINKFGQLHYQDVTTGAMVGNFRTGLGRTDVMQVNPFNGVVALGHSGGTVTMWKPTSSAPLVKMLCHHGPVSALAFHSNGHLMATAGKDKKIKLWDLRKYEVFQTLHGHANTLDFSQKGLLAYGTGSSIQVLGDLSGSQNYSRYMTHSMVKGYQISKLMFRPYEDVLGIGHSMGWSSILIPGSGEPNFDTWVANPFETSKQRREKEVRSLLDKLPPETIMLDPSKIGTVKPAQKEKKPKKEREADIDAAVEAAKDIKMKKKTKGRSKPSKKVKKMKEAIEKVKRPFLEEKMKEEAISRKKRKISEEVSLPKSLKRFAGKKLAI 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00154 535 FunFam Os01g0183100 protein 185 379 - -
Accr3g00154 535 Gene3D - 102 242 IPR015943 GO:0005515
Accr3g00154 535 Pfam WD domain, G-beta repeat 277 308 IPR001680 GO:0005515
Accr3g00154 535 SUPERFAMILY WD40 repeat-like 116 383 IPR036322 GO:0005515
Accr3g00154 535 ProSiteProfiles Trp-Asp (WD) repeats profile. 276 317 IPR001680 GO:0005515
Accr3g00154 535 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 276 310 - -
Accr3g00154 535 Pfam BING4CT (NUC141) domain 356 434 IPR012952 -
Accr3g00154 535 SMART BING4CT_2 355 435 IPR012952 -
Accr3g00154 535 SMART WD40_4 311 345 IPR001680 GO:0005515
Accr3g00154 535 SMART WD40_4 227 266 IPR001680 GO:0005515
Accr3g00154 535 SMART WD40_4 269 308 IPR001680 GO:0005515
Accr3g00154 535 SMART WD40_4 147 184 IPR001680 GO:0005515
Accr3g00154 535 SMART WD40_4 105 144 IPR001680 GO:0005515
Accr3g00154 535 ProSitePatterns Trp-Asp (WD) repeats signature. 295 309 IPR019775 -
Accr3g00154 535 Gene3D - 243 355 IPR015943 GO:0005515
Accr3g00154 535 PANTHER WD-REPEAT PROTEIN BING4 12 529 IPR040315 -
Accr3g00154 535 MobiDBLite consensus disorder prediction 467 489 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00154 181 350 U-box Gene Family AT2G33340 27.660 2.22e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00154 K14768 - gmx:100786818 832.017