Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00146 ATGCCTTTCAAAGAATTTGTTCGCGAGCTCAGGGATATTCGAGATGGCTTGGGCAATATTTCTATAAGAGGAGGGGTTGAAGCAAATCGCATTCCTTCCCGTGGAAGATCTCTTATTGCACCCGAGTTCTCCCCACCACCTTCGTTAGTGACTCAGCAGAGCCCCTGGGCTAACTTACCATCCGAGTTGTTATTAGACATAATTCAGAGGGTGGAAGCAAGCGAAACTTCCTGGCCTGCCCGGCGGGCGGTTGTTGCTTGTGCCTCAGTTTGTAGGTCATGGAGGAAAATAGCAGACGAGGTTGTAAAGACCCCAGAACAGTGTGGTTGGCTTACTTTCCCCATATCTCTGAAGCAGCCTGGTCCGAGAGAGACTCCCATCCAGTGTTTTATAAAGAGAGAAAGGTTGACTTCAAAATATCTTTTATATCTTGGTCTAAGTCCAGCTCTTTCTGGGGATATGAGTAAACTGCTACTGGCAGCAAAGAAGATTAGACGGGCAACATGTACAGAGTTCATAATATCCTTGGTTGCAGATGATTTTTCTAAAGCAAGCAATACATACGTTGGAAAGCTGAGGTCTAATTTTCTAGGTACCAAATTCACAATATTGGATAGTGAACTCCCGCTTGATTCTTCCCTTCTGTCGAGTAGTAAATTGCAGCAGAGAATCCATTCAAAGCAGAGGCAGGTTCTTCCAAGGGCTGCTGTAGTAAAGCATAATGTGGCCACGATATCGTATGAGCTCAATGTTCTCCGCACTAGAGGTCCAAGGAGAATGCAGTGTACCATGCATCCAATTCCAGTGTCTGCCATCCAAGAAGGTGGCACTGCTCCTACTCCTTTGAAGTCTACCAGATGCACTGATGAGAATCTAGCCTCCACGTCCATTTCGAAAGAAAGAAAGCCAGGAGTTGAGTATGGCTCCAATAGTGACGATAAGTCCACAGTATTGAACCAAATCACAAGGGAGCCACTGATTTTGAAAAACAAAGCGCCTAGATGGCATGAACAACTGCAATGTTGGTGTTTGAATTTCAAGGGACGTGTTACAGTGGCCTCAGTAAAGAATTTCCAGCTCGTAGCTGCCGCAGAAGCTCAACAAAATGTTTCAGCGGCAGAGCAGGATAGAGTAATACTGCAGTTTGGGAAAATTGGAAAGGACATATTCACCATGGATTACCGTTACCCCCTCTCTGCATTTCAAGCCTTTGCAATCTGCTTGAGCAGCTTTGACACCAAACCTGCTTGCGAGTGA 1257 0.4566 MPFKEFVRELRDIRDGLGNISIRGGVEANRIPSRGRSLIAPEFSPPPSLVTQQSPWANLPSELLLDIIQRVEASETSWPARRAVVACASVCRSWRKIADEVVKTPEQCGWLTFPISLKQPGPRETPIQCFIKRERLTSKYLLYLGLSPALSGDMSKLLLAAKKIRRATCTEFIISLVADDFSKASNTYVGKLRSNFLGTKFTILDSELPLDSSLLSSSKLQQRIHSKQRQVLPRAAVVKHNVATISYELNVLRTRGPRRMQCTMHPIPVSAIQEGGTAPTPLKSTRCTDENLASTSISKERKPGVEYGSNSDDKSTVLNQITREPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEAQQNVSAAEQDRVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00146 418 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Accr3g00146 418 SUPERFAMILY F-box domain 52 120 IPR036047 GO:0005515
Accr3g00146 418 PANTHER TUBBY-RELATED 51 416 - -
Accr3g00146 418 Pfam F-box domain 56 102 IPR001810 GO:0005515
Accr3g00146 418 CDD F-box_AtTLP-like 56 100 - -
Accr3g00146 418 MobiDBLite consensus disorder prediction 273 297 - -
Accr3g00146 418 Gene3D Tubby Protein; Chain A 114 418 IPR025659 -
Accr3g00146 418 SUPERFAMILY Tubby C-terminal domain-like 105 418 IPR025659 -
Accr3g00146 418 Pfam Tub family 117 413 IPR000007 -
Accr3g00146 418 ProSitePatterns Tub family signature 2. 403 418 IPR018066 -
Accr3g00146 418 PRINTS Tubby superfamily signature 375 394 IPR000007 -
Accr3g00146 418 PRINTS Tubby superfamily signature 188 212 IPR000007 -
Accr3g00146 418 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Accr3g00146 418 PRINTS Tubby superfamily signature 396 418 IPR000007 -
Accr3g00146 418 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Accr3g00146 418 PRINTS Tubby superfamily signature 172 188 IPR000007 -
Accr3g00146 418 PRINTS Tubby superfamily signature 239 266 IPR000007 -
Accr3g00146 418 MobiDBLite consensus disorder prediction 277 297 - -
Accr3g00146 418 Gene3D - 50 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00146 Accr-Chr3 1698430 1700396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00146 31 418 TUB Transcription Factor Family AT1G47270 61.809 1.77e-164 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Accr3g00146 Tub 8e-103 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00146 K19600 - zju:107420271 587.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr3g00146 3 1698430 1700396 Accr3g00146 3 1698430 1700396 ECH