Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00125 ATGTATCCCAACCAATCTTTTTCCTCTGGGTCCTACGCGGAGATGTTGTCTGGGAATTCTCTCTTACCTCATAACTTTACAGAAACTGTAGGAAGCCAAAATGAAGTGAAGTTCATCACAGCCGTTGGTGACACTGTGGCCATGCAATTCATTGATGGGCATTCCAACACTGCAACAGGTGATCCATCTGCCGACAACTCATTCACAAGGCCGCCATTGGGGCTCGTTGACAGTGAACAGAACATACAGAGCCAGGGCTTATCTCTTAGCCTTGGCACACTCATGCCTGTCCCTCCCTTCCAGTACCACTATCCCTCCACCGGCTTTTCGTCACTTATGGCTCAAAGTATTCCTAACTTTAAGGGCACTGTTTCTCTTAAAGATGACGAGGCAAATGCTGAATGCATGGCACCCGTGTCTTCAGGAGGTTTCAGCAACTCCTTCCAGAAGGAGGCTTTGTACAATCCACATCCCTCACTCTATCACAAGGAGGTCACCAATGATCCGTCATGTCTGCATGGGACACAAGGTTTTTCAAACGCTGCCTTAAACTCTCAATACCTTAAAGCAGCACAGGAATTGCTTGATGAAATAGTTAATGTACGAAAGGCTTTAAAACAGCCTGGACTGGAAAAGCAAAAAAGTTCCCGTGACATTGGATTAGATGGCTCCAAAGAGTCCGAGGAAAAGTCTACCAGTCAGTCCGTGCAGAACCAGGACCCCAATGCTTCATCTGCCAATGCATCATGTGAATTGTCACCCGCAGAACGGCAGAGCTTGTTGGATAAGAAGGCAAAGCTTTTGTCCATGTTAGATGAGGTAGATAAAAGATACCGGCAGTATTGCCATCAGATGCAAATGGTGGTATCATATTTTGATATGGTTGCTGGTTGTGGGGCGGCTGAACCATATACTGCTCTTGCTTTGCGAACAATTTCTCGCCATTTTCGTTGTTTGCGTGATGCAATTAGTGGCCAAATTCAAGTGACTCAGAGGAGCCTTGGAGAACAAGAGGGGATACCTCGTCTCCGCTATGTTGATCAGCAGCTAAGGCAACAAAAAGCCCTTCAGCAGCTTGGAGTGATGCGCCAAGCTTGGAGGCCCCAGAGGGGACTTCCTGAAAGTTCTGTTTCAATACTCCGAGCTTGGCTCTTTGAGCACTTCCTTCATCCTTACCCAAAGGATTCGGAGAAAATTATGCTGGCAAGGCAAACAGGCCTTACCAGGAACCAGGTGGCAAACTGGTTCATCAATGCAAGGGTGCGTCTTTGGAAGCCAATGGTTGAGGAAATGTACAAAGAAGAGTTTGGTGATTCTGAGATGGCAAGCTGCAATCTCTCATCTGAAAGTACTCCCCAAGCTCCAAGAGATAATAAAGGGGAAGAGTCGCAGGACAATGTAAAAGCTGCTACTAATGTCCAACAGGGCCAACTTCATGAGTTGAAGCTTGACCATAGCTCCGCTACAGAATTTGATACTGCCCATGGAGAAGCTGTCATGCGTTCTGGAATCATGAAATTGCAGGGTGATCAAAGGCCTAATATGAACAATACCCTTTATTCGAGTGGACCTGTGCCAACCAACCACAACGGTGATGGCTGCTTAATGCCTTCTGATCCGGCCTCATACGATATGTCAGAGTTTGGTAGTTTTCCTGTGGGTGGCCATGTGTCTCTTGCGTTGGAGTTGCGCAACTGTGAAACCGAGGAATTCGCCACATCTGAGAATGGTTTCAACAAACAGCGTAACCAGACGTTAGATTCTTCCCCAGAAAATAATTTGATTGATTATCATTTCACAGATTCAGGAAAGCAACAAAACAGGTTCAGTAATCCTCATCTATTGCATGAGTTTGTGGTCTAG 1863 0.4632 MYPNQSFSSGSYAEMLSGNSLLPHNFTETVGSQNEVKFITAVGDTVAMQFIDGHSNTATGDPSADNSFTRPPLGLVDSEQNIQSQGLSLSLGTLMPVPPFQYHYPSTGFSSLMAQSIPNFKGTVSLKDDEANAECMAPVSSGGFSNSFQKEALYNPHPSLYHKEVTNDPSCLHGTQGFSNAALNSQYLKAAQELLDEIVNVRKALKQPGLEKQKSSRDIGLDGSKESEEKSTSQSVQNQDPNASSANASCELSPAERQSLLDKKAKLLSMLDEVDKRYRQYCHQMQMVVSYFDMVAGCGAAEPYTALALRTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSEMASCNLSSESTPQAPRDNKGEESQDNVKAATNVQQGQLHELKLDHSSATEFDTAHGEAVMRSGIMKLQGDQRPNMNNTLYSSGPVPTNHNGDGCLMPSDPASYDMSEFGSFPVGGHVSLALELRNCETEEFATSENGFNKQRNQTLDSSPENNLIDYHFTDSGKQQNRFSNPHLLHEFVV 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00125 620 CDD homeodomain 366 427 IPR001356 GO:0003677
Accr3g00125 620 ProSiteProfiles 'Homeobox' domain profile. 363 426 IPR001356 GO:0003677
Accr3g00125 620 MobiDBLite consensus disorder prediction 53 74 - -
Accr3g00125 620 MobiDBLite consensus disorder prediction 230 251 - -
Accr3g00125 620 Pfam Associated with HOX 183 324 IPR006563 -
Accr3g00125 620 Gene3D - 363 440 - -
Accr3g00125 620 MobiDBLite consensus disorder prediction 442 484 - -
Accr3g00125 620 SMART prehox3 176 325 IPR006563 -
Accr3g00125 620 MobiDBLite consensus disorder prediction 465 482 - -
Accr3g00125 620 SUPERFAMILY Homeodomain-like 367 434 IPR009057 -
Accr3g00125 620 MobiDBLite consensus disorder prediction 209 251 - -
Accr3g00125 620 Pfam Homeobox KN domain 383 422 IPR008422 GO:0003677|GO:0006355
Accr3g00125 620 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 113 454 - -
Accr3g00125 620 SMART HOX_1 366 430 IPR001356 GO:0003677
Accr3g00125 620 MobiDBLite consensus disorder prediction 209 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00125 Accr-Chr3 1545574 1547877 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00125 177 619 Homeobox Transcription Factor Family AT2G16400 46.799 4.12e-116 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Accr3g00125 POX 4.4e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00125 - - gmx:100775682 804.283