Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00124 ATGATGTATCCCAACCAATCTTTTTCCTCTGGGTCCTACGCGGAGATGTTGTCTGGGAATTCTCTCTTACCTCATAACTTTACAGAAACTGTAGGAAGCCAAAATGAAGTGAAGTTCATCACAGCCGTTGGTGACACTGTGGCCATGCAATTCATTGATGGGCATTCCAACACTGCAACAGGTGATCCATCTGCCGACAACTCATTCACAAGGCCGCCATTGGGGCTCGTTGACAGTGAACAGAACATACAGAGCCAGGGCTTATCTCTTAGCCTTGGCACACTCATGCCTGTCCCTCCCTTCCAGTACCACTATCCCTCCACCGGCTTTTCGTCACTTATGGCTCAAAGTATTCCTAACTTTAAGGGCACTGTTTCTCTTAAAGATGACGAGGCAAATGCTGAATGCATGGCACCCGTGTCTTCAGGAGGTTTCAGCAACTCCTTCCAGAAGGAGGCTTTGTACAATCCACATCCCTCACTCTATCACAAGGAGGTCACCAATGATCCGTCATGTCTGCATGGGACACAAGGTTTTTCAAACGCTGCCTTAAACTCTCAATACCTTAAAGCAGCACAGGAATTGCTTGATGAAATAGTTAATGTACGAAAGGCTTTAAAACAGCCTGGACTGGAAAAGCAAAAAAGTTCCCGTGACATTGGATTAGATGGCTCCAAAGAGTCCGAGGAAAAGTCTACCAGTCAGTCCGTGCAGAACCAGGACCCCAATGCTTCATCTGCCAATGCATCATGTGAATTGTCACCCGCAGAACGGCAGAGCTTGTTGGATAAGAAGGCAAAGCTTTTGTCCATGTTAGATGAGGTAGATAAAAGATACCGGCAGTATTGCCATCAGATGCAAATGGTGGTATCATATTTTGATATGGTTGCTGGTTGTGGGGCGGCTGAACCATATACTGCTCTTGCTTTGCGAACAATTTCTCGCCATTTTCGTTGTTTGCGTGATGCAATTAGTGGCCAAATTCAAGTGACTCAGAGGAGCCTTGGAGAACAAGAGGGGATACCTCGTCTCCGCTATGTTGATCAGCAGCTAAGGCAACAAAAAGCCCTTCAGCAGCTTGGAGTGATGCGCCAAGCTTGGAGGCCCCAGAGGGGACTTCCTGAAAGTTCTGTTTCAATACTCCGAGCTTGGCTCTTTGAGCACTTCCTTCATCCTTACCCAAAGGATTCGGAGAAAATTATGCTGGCAAGGCAAACAGGCCTTACCAGGAACCAGGTGGCAAACTGGTTCATCAATGCAAGGGTGCGTCTTTGGAAGCCAATGGTTGAGGAAATGTACAAAGAAGAGTTTGGTGATTCTGAGATGGCAAGCTGCAATCTCTCATCTGAAAGTACTCCCCAAGCTCCAAGAGATAATAAAGGGGAAGAGTCGCAGGACAATGTAAAAGCTGCTACTAATGTCCAACAGGGCCAACTTCATGAGTTGAAGCTTGACCATAGCTCCGCTACAGAATTTGATACTGCCCATGGAGAAGCTGTCATGCGTTCTGGAATCATGAAATTGCAGGGTGATCAAAGGCCTAATATGAACAATACCCTTTATTCGAGTGGACCTGTGCCAACCAACCACAACGGTGATGGCTGCTTAATGCCTTCTGATCCGGCCTCATACGATATGTCAGAGTTTGGTAGTTTTCCTGTGGGTGGCCATGTGTCTCTTGCGTTGGAGTTGCGCAACTGTGAAACCGAGGAATTCGCCACATCTGAGAATGGTTTCAACAAACAGCGTAACCAGACGTTAGATTCTTCCCCAGAAAATAATTTGATTGATTATCATTTCACAGATTCAGGAAAGCAACAAAACAGGTTCAGTAATCCTCATCTATTGCATGAGTTTGTGGTCTAG 1866 0.463 MMYPNQSFSSGSYAEMLSGNSLLPHNFTETVGSQNEVKFITAVGDTVAMQFIDGHSNTATGDPSADNSFTRPPLGLVDSEQNIQSQGLSLSLGTLMPVPPFQYHYPSTGFSSLMAQSIPNFKGTVSLKDDEANAECMAPVSSGGFSNSFQKEALYNPHPSLYHKEVTNDPSCLHGTQGFSNAALNSQYLKAAQELLDEIVNVRKALKQPGLEKQKSSRDIGLDGSKESEEKSTSQSVQNQDPNASSANASCELSPAERQSLLDKKAKLLSMLDEVDKRYRQYCHQMQMVVSYFDMVAGCGAAEPYTALALRTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSEMASCNLSSESTPQAPRDNKGEESQDNVKAATNVQQGQLHELKLDHSSATEFDTAHGEAVMRSGIMKLQGDQRPNMNNTLYSSGPVPTNHNGDGCLMPSDPASYDMSEFGSFPVGGHVSLALELRNCETEEFATSENGFNKQRNQTLDSSPENNLIDYHFTDSGKQQNRFSNPHLLHEFVV 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00124 621 SUPERFAMILY Homeodomain-like 368 435 IPR009057 -
Accr3g00124 621 Pfam Homeobox KN domain 384 423 IPR008422 GO:0003677|GO:0006355
Accr3g00124 621 CDD homeodomain 367 428 IPR001356 GO:0003677
Accr3g00124 621 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 114 455 - -
Accr3g00124 621 SMART HOX_1 367 431 IPR001356 GO:0003677
Accr3g00124 621 MobiDBLite consensus disorder prediction 210 252 - -
Accr3g00124 621 Gene3D - 364 441 - -
Accr3g00124 621 MobiDBLite consensus disorder prediction 443 485 - -
Accr3g00124 621 Pfam Associated with HOX 184 325 IPR006563 -
Accr3g00124 621 MobiDBLite consensus disorder prediction 466 483 - -
Accr3g00124 621 MobiDBLite consensus disorder prediction 210 230 - -
Accr3g00124 621 ProSiteProfiles 'Homeobox' domain profile. 364 427 IPR001356 GO:0003677
Accr3g00124 621 SMART prehox3 177 326 IPR006563 -
Accr3g00124 621 MobiDBLite consensus disorder prediction 231 252 - -
Accr3g00124 621 MobiDBLite consensus disorder prediction 54 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00124 Accr-Chr3 1545571 1547877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00124 178 620 Homeobox Transcription Factor Family AT2G16400 46.799 4.06e-116 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Accr3g00124 POX 4.4e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00124 - - gmx:100775682 804.283