Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00117 ATGCTGAAATCAGGGATGGGAATCGAAGAGCGAAAGCAGGTGAAACGGCCCGCCCAGGCCAGCTCCAGGAAAGGCTGTATGAGAGGCAAAGGTGGCCCTGAAAACGCCAGCTGCACCTACAAGGGCGTTCGCCAGAGGACCTGGGGCAAATGGGTCGCCGAAATCCGCGAGCCCAATCGCGGCGCTCGCCTCTGGCTCGGCACCTTCGAGACCTCCCATGAAGCCGCCCTCGCCTACGACGCCGCCGCCCGTAAGCTCTACGGATCCGAGGCCAAGCTCAATCTCCCCGACCTCTCCCTCAATTCTCAGCCGCCTGATCTGCCGCATTCCTCTGTCCCCTCCCAGATTCCTCCAATGCTGCCGGACCACCAGCTCCTCCACCACTCCGCAGCTAATATTCCCCCCTGCTCTTTCAACGCCGCCATCCCCAACAATGCTCCGATGATGTCCATGGCTTCTCATCAGCAACTTGCACCCGCAGTGTACAGCCCGAACTCTAGCTCTAGCTCTAGCTCCACCATGTCCGTTCCGTTCAACGCTGACGAGAACTTGATGAAACCGATTGAGGAGGAGGAGGATTTCGGTCAATTCTGGGGGACCATGAACGACGGCCTCCCTGTCCCTGAGTTCGACGATTCAATCTGGGCCGAAGCCGCCATGTCTCTCGATTTCCCCGTAATGTCCGATGCGACCATTTATGGCGCCGGAACTTTGGGAGATGCTGCTCCCTGGGACTCTCTGCAAACTCCGTGGTGCATGTGA 762 0.5906 MLKSGMGIEERKQVKRPAQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHEAALAYDAAARKLYGSEAKLNLPDLSLNSQPPDLPHSSVPSQIPPMLPDHQLLHHSAANIPPCSFNAAIPNNAPMMSMASHQQLAPAVYSPNSSSSSSSTMSVPFNADENLMKPIEEEEDFGQFWGTMNDGLPVPEFDDSIWAEAAMSLDFPVMSDATIYGAGTLGDAAPWDSLQTPWCM 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00117 253 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 13 190 - -
Accr3g00117 253 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Accr3g00117 253 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Accr3g00117 253 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Accr3g00117 253 MobiDBLite consensus disorder prediction 1 17 - -
Accr3g00117 253 MobiDBLite consensus disorder prediction 1 38 - -
Accr3g00117 253 FunFam Ethylene-responsive transcription factor 2 38 97 - -
Accr3g00117 253 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Accr3g00117 253 CDD AP2 38 98 IPR001471 GO:0003700|GO:0006355
Accr3g00117 253 SUPERFAMILY DNA-binding domain 39 97 IPR016177 GO:0003677
Accr3g00117 253 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Accr3g00117 253 Pfam AP2 domain 39 88 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00117 Accr-Chr3 1489756 1490517 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00117 15 118 AP2-EREBP Transcription Factor Family AT1G75490 78.846 9.79e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Accr3g00117 AP2 8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00117 - - gmx:100797850 300.056