Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00109 ATGAAGATCCTGTGCGACGTCTGTAATAACCAAGACGCTTCCCTATTCTGCACCGCTGACGAAGCAGCCCTATGCGATGCCTGCGACCACCGGATCCACCATGCCAACAAGCTCGCCTCCAAGCACCAGCGCTTCTCTCTTCACCGCCCTTCTCCCAACCAATTCCCTCTCTGCGATATTTGCCTGGAGAGAAGAGCGTTTGTGTTCTGTCAACAGGACAGAGCAATTCTATGCAAAGATTGTGACACGCCAATTCACGCTGCCAACGAGCACACCCGGAAGCACAATAGATTTCTTCTGACGGGGATTAAGTTCTCGGATGCTGCCACGCCTTATTCACCATCAACCTCCACCCCCGTTTTGACGAATGGTTCTGATTCCGTGTCTAATTCCAAGTTGCAGAATTCAGCTAAGAACTCTGTTTCCGCTTCTTCTGCCATCTCACACCCCCCTTCAATGGACAAGACTTCAGCTTCAACAGTATCAACACATGCCGCAATTAACAAGGCTGTGGGAAATTTATCAACGAACGAAGGGACTGTTTCCACAAGTAGTATATCGGAGTATTTGATAGAGACTCTCCCGGGCTGGCAGGTCGACGACTTTCTTGACTCTTCTGCTATCCCGTTTGGTTTCAGTAATAAGAGTCATGATATGTTGGCCGTGTTCGATGCTGATATTGAGGGAAATATGGGTTCTTTCTCTACCGAGAGTATGGGGATCTGGGTTCCTCAGGCACCCACTCCTCTGTTTACCCAACAAGTGGATCGGCAGATCAAGTTCCAAGAGACAAAAGAGACGACCAATACTGAGGCCAGCAGATCAAGGTTGAGGGATGATAACTTCATAGTTCCGCAAATGAACTCTCCTATTGGGTCCAAGAGATCCAGACTTCTTTGGTAG 903 0.4873 MKILCDVCNNQDASLFCTADEAALCDACDHRIHHANKLASKHQRFSLHRPSPNQFPLCDICLERRAFVFCQQDRAILCKDCDTPIHAANEHTRKHNRFLLTGIKFSDAATPYSPSTSTPVLTNGSDSVSNSKLQNSAKNSVSASSAISHPPSMDKTSASTVSTHAAINKAVGNLSTNEGTVSTSSISEYLIETLPGWQVDDFLDSSAIPFGFSNKSHDMLAVFDADIEGNMGSFSTESMGIWVPQAPTPLFTQQVDRQIKFQETKETTNTEASRSRLRDDNFIVPQMNSPIGSKRSRLLW 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00109 300 SMART bboxneu5 53 100 IPR000315 GO:0008270
Accr3g00109 300 SMART bboxneu5 4 47 IPR000315 GO:0008270
Accr3g00109 300 FunFam B-box zinc finger protein 21 1 98 - -
Accr3g00109 300 Pfam B-box zinc finger 55 93 IPR000315 GO:0008270
Accr3g00109 300 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Accr3g00109 300 CDD Bbox1_BBX-like 57 100 - -
Accr3g00109 300 MobiDBLite consensus disorder prediction 114 157 - -
Accr3g00109 300 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 289 - -
Accr3g00109 300 CDD Bbox1_BBX-like 4 47 - -
Accr3g00109 300 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Accr3g00109 300 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Accr3g00109 300 Gene3D Classic Zinc Finger 1 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00109 Accr-Chr3 1371007 1372152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00109 1 300 C2C2-CO-like Transcription Factor Family AT1G75540 41.379 2.69e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Accr3g00109 zf-B_box 1.9e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00109 - - qsa:O6P43_018639 347.821