Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00094 ATGGCTTTCGTCGAAGATATGGTTAAAACCGGAGGATTAATTGTTGGGGCTCAATCTCTAGCTGCTGAGATGAAGATGTTGAAAGAAATGCAGGAGCAATCTGGGGTCCGAAAGAGTATAAATTCTGAGTTATGGCATGCTTGCGCTGGCCCACTTGTAAGCTTGCCTCAGCTGGGTAGTCTGGTGTATTACTTCCCTCAGGGACACAGTGAACAGGTGGCGGCTTCCACTAGAAGAACAGCAACTTCACAGATTCCAAACTATCCGAATCTTCAATCTCAGTTGCTTTGCCAAGTTCAAAATGTCGGACTTCATGCAGATAAAGACACGGACGAAATATACGCTCAAATGAGTCTCCAACCATTGAATTCTGAAAAAGATGTCTTCCCTATATCAGACTTTGGGATGAAGCCTAGTAAACATCCAAGTGAATATTTCTGCAAAACTTTGACTGCTAGTGATACAAGCACGCATGGTGGCTTTTCTGTACCTCGCAGGGCTGCAGAAAAGCTCTTTCCTCCATTGGATTATACCATTCAGCCCCCGACACAAGAACTTGTTGTCCGAGACTTACATGATAATACTTGGACATTCCGACATATATACCGAGGCCAGCCGAAGAGACATCTTCTCACAACAGGATGGAGTTTATTTGTTGGTTCAAAGAGGCTCAAAGCTGGTGATGCTGTTCTTTTTATCAGGGACGAGAAATCACAATTGCTGGTTGGTGTTAGGCGTGCAAATCGTCAACAGACAACATTGCCGTCATCTGTCCTTTCTGCCGATAGCATGCATATTGGCGTGCTAGCTGCTGCAGCTCATGCTGCTGCCAATCAGAGTCCGTTTACTATTTTCTACAACCCAAGGGCATGCCCTTCAGAATTTGTTATTCCACTGGTTAAATACAGAAAAGCTGTATATGGTACCCAACTCTCAGTTGGCATGAGATTTGGTATGATGTTTGAGACAGAGGAATCGGGTAAGCGCAGGTATATGGGCACTATAGTAGGTGTCAGTGACTTGGACCCTTTGAGGTGGCCTGGTTCAAAGTGGAGAAATATTCAGGTGGAGTGGGATGAGCCTGGGTGTGGCCATAAGCAGAATAGAGTTAGTGCTTGGGAAATTGAGACTCCTGAAAGTCTTTTTATCTTTCCTTCTTTGACTTCGAGCCTAAAACGACCATTTCAATCTGGATCTTTTGGTACAGAAAATGAGTGGGGGACTTTGTTAAGAAGGCCTTTTATACAAGTTCCTGAAAATGCAAATTTGGAGCTCCCAAACAGCTTACAAAATCTGTACATGGAACACCTGATGAAGGTTCTTTTTAAACCTCAACTGGTGAACAATCCTGGAGCGTTTTCACCAGTCATGCAGCAAGAATCTACTGCCAAGAGTGATCTCTCACAAGATTTGAAGAAGACGCCAGCGACTGATAGCCAAAAAGCTCATATTGTATGTTCAGGGAGCATGCCTCCAAAAAATCCAGATTACTCTCAATCTCTCCCTGACCAATCTAATGCCTTCAATTTGCATTCCCTGTTGAAAAGTGATCAAACTGGGAAATTGCACCGTCAGCCTAGAATTGAGAATGCTCAATCTTCTGGAGCAGTTTCTGACAAGACAAAATTAGAATCTGTGGACTTAACTGACCATATTTTTGACTGTCCTTCAATAGAAGGATGCAACATGGAAAAAGTGGCGGCCAACCCTATGAACCCACCCGGCCATGCGAGTCAAATGGCAATGCTAAATCAAAACCAGGGTCCATGGCCCGTGCAGCAACAGTTAGAATCAACAATACCTCATTCTCAAATGGTTGATATTCCTCAATCCGATTACGCGCTTTTAAATGGCCTGCTTCCTCAGGCAGACGTTGATGAATGGATGTTGTATTCTTCCTGCCAATCTTTTCCCGGTGTGAGTAGATCAGCTGGGCCTTTGCAAGAACAGTCTACACTTGTCCCACAAGCAGTTAATACTACCCCTTTACCTTCCGTGAGTCAAGAAATGTGGGATCATTATCTCAAAAATTTCAAGTCCTTACCTCAAGCAGACCAGTTAACACCCATCTCACAGCAAGGGTTTCAGAACTTCAATTGTATGTCTAATCCAAATAACCTGAGGGATCTATCAGCTGAGAGCAATACCCAAAGCGGGGTGTATAGCAGTGTCAATGTGGATGCTAGTAACAGTGTAAGTACTATGGTTGATCCTTCTACTTCGAGTACCATTTTGGATGATTTTTGCGTGTTGAAGGATGGGGAGTTCCAGAACCCATCAGAATGCATGGTTGGCAACGTAAGTTCGAGCCAGGACGTCCAGTCTCAGATAACCTCTGCAAGTCTAGCTGAGTCGCACATTTTCCCTCTGCAAGACATAACTGACAACTCTGGTGGTGGTACTTCTTCAAGCCACGTTGATTTTGATGAAAGCAGCTTTCTGCAGAATAACTCGTGGGCGCAAGTTGCTGCACCTGTGCGAACCTACACCAAGGTTCAAAAGGCAGGGTCAGTAGGAAGATCATTAGATGTAACCACTTTTAAGAACTACGAGGAACTGATCTCCGCAATTGAACGGATGTTTGGACTTGAGGGTCTGCTGAACGACACCAAAGGTTCAGGATGGAAATTGGTATATGTTGATTATGAAAACGATGTTCTGCTTGTTGGGGATGATCCTTGGGAGGAATTCGTGGGATGTGTCCGGTGCATCAGGATATTATCTCCGGTGGAAGTGAAACAGATGAGCGAGGAGGGAATGAAGCTTCTAAACAGTGCTGCGGTGCAACAGTTCAATGGAACCATGTCAGGTGGCTGCCCTTAG 2823 0.446 MAFVEDMVKTGGLIVGAQSLAAEMKMLKEMQEQSGVRKSINSELWHACAGPLVSLPQLGSLVYYFPQGHSEQVAASTRRTATSQIPNYPNLQSQLLCQVQNVGLHADKDTDEIYAQMSLQPLNSEKDVFPISDFGMKPSKHPSEYFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLKAGDAVLFIRDEKSQLLVGVRRANRQQTTLPSSVLSADSMHIGVLAAAAHAAANQSPFTIFYNPRACPSEFVIPLVKYRKAVYGTQLSVGMRFGMMFETEESGKRRYMGTIVGVSDLDPLRWPGSKWRNIQVEWDEPGCGHKQNRVSAWEIETPESLFIFPSLTSSLKRPFQSGSFGTENEWGTLLRRPFIQVPENANLELPNSLQNLYMEHLMKVLFKPQLVNNPGAFSPVMQQESTAKSDLSQDLKKTPATDSQKAHIVCSGSMPPKNPDYSQSLPDQSNAFNLHSLLKSDQTGKLHRQPRIENAQSSGAVSDKTKLESVDLTDHIFDCPSIEGCNMEKVAANPMNPPGHASQMAMLNQNQGPWPVQQQLESTIPHSQMVDIPQSDYALLNGLLPQADVDEWMLYSSCQSFPGVSRSAGPLQEQSTLVPQAVNTTPLPSVSQEMWDHYLKNFKSLPQADQLTPISQQGFQNFNCMSNPNNLRDLSAESNTQSGVYSSVNVDASNSVSTMVDPSTSSTILDDFCVLKDGEFQNPSECMVGNVSSSQDVQSQITSASLAESHIFPLQDITDNSGGGTSSSHVDFDESSFLQNNSWAQVAAPVRTYTKVQKAGSVGRSLDVTTFKNYEELISAIERMFGLEGLLNDTKGSGWKLVYVDYENDVLLVGDDPWEEFVGCVRCIRILSPVEVKQMSEEGMKLLNSAAVQQFNGTMSGGCP 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00094 940 SMART B3_2 146 248 IPR003340 GO:0003677
Accr3g00094 940 CDD B3_DNA 145 246 IPR003340 GO:0003677
Accr3g00094 940 ProSiteProfiles PB1 domain profile. 827 911 IPR000270 GO:0005515
Accr3g00094 940 Pfam AUX/IAA family 824 912 IPR033389 -
Accr3g00094 940 Gene3D - 144 247 IPR015300 -
Accr3g00094 940 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 37 917 IPR044835 GO:0003677|GO:0006355|GO:0009725
Accr3g00094 940 Gene3D - 823 916 - -
Accr3g00094 940 MobiDBLite consensus disorder prediction 518 541 - -
Accr3g00094 940 MobiDBLite consensus disorder prediction 525 540 - -
Accr3g00094 940 FunFam Auxin response factor 823 916 - -
Accr3g00094 940 Gene3D - 310 382 - -
Accr3g00094 940 MobiDBLite consensus disorder prediction 457 483 - -
Accr3g00094 940 SUPERFAMILY DNA-binding pseudobarrel domain 134 275 IPR015300 -
Accr3g00094 940 ProSiteProfiles B3 DNA-binding domain profile. 146 248 IPR003340 GO:0003677
Accr3g00094 940 FunFam Auxin response factor 144 248 - -
Accr3g00094 940 SUPERFAMILY CAD & PB1 domains 830 906 - -
Accr3g00094 940 Pfam B3 DNA binding domain 146 247 IPR003340 GO:0003677
Accr3g00094 940 Pfam Auxin response factor 272 355 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Accr3g00094 940 FunFam Auxin response factor 310 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00094 Accr-Chr3 1241484 1246532 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00094 19 936 B3 DNA Binding Superfamily AT1G19850 59.081 0.0 991
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Accr3g00094 AUX_IAA 2.7e-10 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00094 K14486 - gmx:100813003 1409.82