Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00088 ATGGCTCTCCTTACTTTCTTGCCCGAACAGTCAGATTCGGACCCCAACTCTCAAGTTCCTACACGCAGGCGAAATAAGCCGCAGAAGAAGAAGAAGCAGAAACCACCGTCTTCATGGGACCAAATCAAGAATCTCCTCACCTGCAAACAGATCCAAGGGTCCAAAGTTCACGACCCCTCCAAAAATCCTACCCCACTCGCCTATTCCAAGGTCGGATCTTCTTGCAGCTCCATCTGTAGCTTCAAAGACGTTGCCCACGGCAACACGCGTGTTGTTCACAGACCTGATAGCTCCTCGCCGGAGAGCAGTGCTCTGGGTCAGCAAACTGGGCTACTTGGCCGGAAGCCTCCCAATAACTCGTCATCCCGGTCATCGGCCAAATCCAACGCCACTCCAGCCTGCACTACATCATCCAGAGGGATGCAATTCAGGAAACTCTCCGGCTGTTATGAGTGTCGCATGATTGTTGACCCTTCCAGGCTCCCGATTCCAAGAAGCACTCTGTGTTCTTGCCCTCACTGTGGAGAGGTCTTCCCTAAGATGGAAAGCTTGGAGCTTCATCAGACCACTCGCCATGCCGTTTCAGAGCTGGGCCCGGAGGATTCGGGTCGAAATATTGTGGAGATAATATTCAAGTCAAGCTGGCTGAAGAAGGGCAGCCCCATCTGTAAGATCGAACGGATACTCAAAGTCCACAACACCCAGCGCACCATCCAACGGTTCGAGGAGTGCCGGGACGCAGTCAAGAGCCGTGCTCAGAACAGCGTCAAGAAAAACCCCAGGTGCGCCGCCGACGGCAACGAGCTCTTGCGATTCCACTGTACCAGCCACTCATGCTCCTTGGGTGCACGTGGCTCCTCCTCCTTGTGTGGGTCCTTCCCCGGCTGCGGTGTTTGCACCATCATCCGCCACGGATTCCAGGGCAAGTCTGATAGCGCCGGTGCCGCTGAACAAATACCATGCAAAGGAGTGCGGACCACGGCCAGCAGCGGTAGGGCCCACGACGCCCTGCAGTGTAACGACACCAGGAGGGCGATGCTGGTGTGCCGAGTCATTGCCGGGAGGGTGAAGCGCGTTGCGGAGGAGACGCCGGCGGAGGAGGAGACTGTGGCGGCTGGGTCTTATGACTCGGTAGCGGGGTGCGCCGGGATCTACTCGAATCTTGAGGAGTTGGTGGTGTTCAATCCAAAGGCAATCCTGCCTTGTTTCGTTGTCATTTACAAAGTTGACGAAGGTCATCGTTATTGA 1248 0.5577 MALLTFLPEQSDSDPNSQVPTRRRNKPQKKKKQKPPSSWDQIKNLLTCKQIQGSKVHDPSKNPTPLAYSKVGSSCSSICSFKDVAHGNTRVVHRPDSSSPESSALGQQTGLLGRKPPNNSSSRSSAKSNATPACTTSSRGMQFRKLSGCYECRMIVDPSRLPIPRSTLCSCPHCGEVFPKMESLELHQTTRHAVSELGPEDSGRNIVEIIFKSSWLKKGSPICKIERILKVHNTQRTIQRFEECRDAVKSRAQNSVKKNPRCAADGNELLRFHCTSHSCSLGARGSSSLCGSFPGCGVCTIIRHGFQGKSDSAGAAEQIPCKGVRTTASSGRAHDALQCNDTRRAMLVCRVIAGRVKRVAEETPAEEETVAAGSYDSVAGCAGIYSNLEELVVFNPKAILPCFVVIYKVDEGHRY 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00088 415 Gene3D - 185 411 - -
Accr3g00088 415 MobiDBLite consensus disorder prediction 92 137 - -
Accr3g00088 415 ProSiteProfiles Zinc finger C2H2 type domain profile. 169 197 IPR013087 -
Accr3g00088 415 FunFam C2H2-like zinc finger protein 193 408 - -
Accr3g00088 415 ProSitePatterns Zinc finger C2H2 type domain signature. 169 192 IPR013087 -
Accr3g00088 415 SUPERFAMILY ADP-ribosylation 194 408 - -
Accr3g00088 415 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 37 407 - -
Accr3g00088 415 MobiDBLite consensus disorder prediction 90 137 - -
Accr3g00088 415 MobiDBLite consensus disorder prediction 1 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00088 Accr-Chr3 1093664 1095884 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00088 1 411 C2H2 Transcription Factor Family AT1G75710 62.876 2.53e-178 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr3g00088 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00088 - - cave:132189755 597.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr3g00088 3 1093664 1095884 Accr3g00088 3 1093664 1095884 ECH