Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00080 ATGGGCCGCCTTACATCATTGTTTTCATTTCTATTAACACTTCATATATCGGCATCAGGAGTGATTTCAACTACATTCACAATAGTTAACAAATGCGAGTATACTGTATGGCCGGGCATTCTATCGAACGCCGGAGTTACGCCTCTCCCGATTACCGGTTTTGTTCTGCAAACGGGTGAGTCGAAGACAATCTCTGCACCTACCGCTTGGGGAGGTCGCTTCTGGGGCCGAACTCTCTGCTCCCAGGACTCCAGCGGCAAGTTCTCCTGCGTCACGGGCGATTGCGGCTCGGGCACACTGGAGTGCGCCGGCAACGGAGCCAGACCACCGGCCACGCTGGCAGAATTCACTTTGAACGGCGACGGTGGAATGGATTTCTTCGACGTCAGCTTGGTAGACGGTTACAACGTGCCTATGCTGGTCGTCCCTCAGGGGGGCTCGGGTGACAACTGCTCCAGCACGGGGTGCGTTGTGGATCTGAATAGCGCGTGTCCGTCGGAGCTCAAGGTTGCGAGCGTGGATGGGAAACAAGGGGTGGCGTGCAAGAGCGCCTGCGAGGCGTTCGGCTCCCCACAGTACTGCTGCAGCGGTGCGTACGGGACGCCAGATACCTGCAAGCCCTCCTCCTTCTCCCTGCTGTTCAAAAGCGCCTGCCCGCGCGCCTACAGCTACGCTTATGACGATAAGACCAGCACATTCACGTGCGCCTCCGCAGATTATACAATAACATTTTGTCCCACGCCTAACACCAGTAAGAAAGCATCGGAAGACGCATCAGCATCTTCAATGAGTAACAGCAGCATTGTGTACGAAGGAGCTGTTGGTCAGAGCGAGATATCAAAGGGTCCCCACTTGTTGAAATTCGGGCCCATTTCTAGCGTGGCAGTGACCGTTTGGCTTTTTTGCTTCCTCCTGTGA 918 0.5512 MGRLTSLFSFLLTLHISASGVISTTFTIVNKCEYTVWPGILSNAGVTPLPITGFVLQTGESKTISAPTAWGGRFWGRTLCSQDSSGKFSCVTGDCGSGTLECAGNGARPPATLAEFTLNGDGGMDFFDVSLVDGYNVPMLVVPQGGSGDNCSSTGCVVDLNSACPSELKVASVDGKQGVACKSACEAFGSPQYCCSGAYGTPDTCKPSSFSLLFKSACPRAYSYAYDDKTSTFTCASADYTITFCPTPNTSKKASEDASASSMSNSSIVYEGAVGQSEISKGPHLLKFGPISSVAVTVWLFCFLL 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00080 305 ProSiteProfiles Thaumatin family profile. 23 246 IPR001938 -
Accr3g00080 305 Pfam Thaumatin family 30 246 IPR001938 -
Accr3g00080 305 Gene3D Thaumatin 24 246 IPR037176 -
Accr3g00080 305 PANTHER OS03G0233200 PROTEIN 9 246 IPR001938 -
Accr3g00080 305 PIRSF PR5 2 282 IPR001938 -
Accr3g00080 305 CDD TLP-PA 25 245 - -
Accr3g00080 305 FunFam THAUMATIN-LIKE PROTEIN 1 24 246 - -
Accr3g00080 305 SUPERFAMILY Osmotin, thaumatin-like protein 24 246 IPR037176 -
Accr3g00080 305 ProSitePatterns Thaumatin family signature. 86 102 IPR017949 -
Accr3g00080 305 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Accr3g00080 305 PRINTS Pathogenesis-related protein signature 236 245 IPR001938 -
Accr3g00080 305 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Accr3g00080 305 PRINTS Pathogenesis-related protein signature 73 84 IPR001938 -
Accr3g00080 305 SMART tha2 26 246 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00080 Accr-Chr3 1031260 1032499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00080 10 277 Receptor kinase-like Gene Family AT5G38280 52.206 3.64e-95 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00080 - - gmx:100787631 463.766