Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00062 ATGGGACTTGGTTTTTTCAAGGCGCTTTGCTGCAGCAACTCTCACCATGAAATTCCCATAGTCTCATCGGACTCATCTCCGAGCCGCACTCGCAGGGAGAGGAGTAGAGAAGAGCACGCAGATAGAGCAAAGGCGGCTGCTCCGACGCAGGCACAAGTAGGGCCGGTGCTGGGGAAACCGTACGTGGACATAAGGAAGATGTACGAGCTGGAGAAAGAACTGGGGAGAGGGCAGTCGGGAGTGACATATCTGTGCACAGAGAAGATGACGGGGAGAAAGTACGCGTGCAAGAGCATACCGAGGAGGAAGCTGATGAGGAAGGAGGAAATAGAGGACGCGCGAAGGGAGATACTGTTGCTGCAGCATCTGTCGGGACAGCCCAACATAGTGGAATTCAGGGGGGGCTACGAGGACAGGCAGAATGTGTACCTGGTCATGGAACTCTGCACTGGAGGCGAGCTCTTCGACCGCATCATTGCCAAAGGCACGTATTCCGAGAAGGAGGCCGCCGCCTTGTTCCGCCAGATCGTCACCGTGGTTCACGTCTGCCACTTCATGGGAGTGATGCATCGGGACTTGAAGCCCGAGAATTTCTTGATGGCCAGCCCCGACGATGACGCCCCCATCAAAGCCACCGATTTCGGACTCTCCGTCTTCATTGAGCCCGGTCTGTCCTCTTCTCTATCCTTTCTTTCATATTCGCAGTATGGATTAGCCCAAGCCCAGATTCCGTTGGGCTTCGTCTTTAGGACTAGGGATGGGTAG 765 0.5516 MGLGFFKALCCSNSHHEIPIVSSDSSPSRTRRERSREEHADRAKAAAPTQAQVGPVLGKPYVDIRKMYELEKELGRGQSGVTYLCTEKMTGRKYACKSIPRRKLMRKEEIEDARREILLLQHLSGQPNIVEFRGGYEDRQNVYLVMELCTGGELFDRIIAKGTYSEKEAAALFRQIVTVVHVCHFMGVMHRDLKPENFLMASPDDDAPIKATDFGLSVFIEPGLSSSLSFLSYSQYGLAQAQIPLGFVFRTRDG 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00062 254 SMART serkin_6 68 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr3g00062 254 PANTHER SERINE/THREONINE-PROTEIN KINASE 64 224 - -
Accr3g00062 254 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Accr3g00062 254 Gene3D Transferase(Phosphotransferase) domain 1 154 238 - -
Accr3g00062 254 MobiDBLite consensus disorder prediction 20 50 - -
Accr3g00062 254 MobiDBLite consensus disorder prediction 27 44 - -
Accr3g00062 254 Gene3D Phosphorylase Kinase; domain 1 70 153 - -
Accr3g00062 254 SUPERFAMILY Protein kinase-like (PK-like) 67 224 IPR011009 -
Accr3g00062 254 Pfam Protein kinase domain 68 223 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr3g00062 254 ProSiteProfiles Protein kinase domain profile. 68 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr3g00062 254 ProSitePatterns Protein kinases ATP-binding region signature. 74 97 IPR017441 GO:0005524
Accr3g00062 254 FunFam Calcium-dependent protein kinase 1 70 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00062 Accr-Chr3 790877 791641 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00062 36 223 EF-hand Containing Proteins AT5G12180 61.702 2.14e-84 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Accr3g00062 Pkinase 4.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00062 K13412 - gmx:100816157 295.434