Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00042 ATGGCAGGCCAGAGCTCTAACGATGCTCCCAGTGCTAGTAATGTTTCAGCAGAATTGTCTGATTCAACTGTTCAGCTCAATGTCAAGACTTTAGATTCCCACAGTTATAGTTTTCAAGTGGACAAAAACATGCTAGTTTCATTGTTGAAAGAGAAAATAGCCAATGAAACTGGTGTTCCAGTAGGTCAGCAGCGGTTAATATTCAGGGGGAAAGTCTTGAAGGATAATCATGTTCTTTCTGAGTATCATGTTGAGAATGGGGATACATTGCATTTAGTTCAAAGGCAATTGAATCAGTCGCAGACTCCTGATACCAGTTCTGGTGAGACAACTGGTACAAGTGGAAACCGAGGAAATGATGCAAGCTCTTGGATGCCTCATAACCGTGTTGGGCAAATTTCACACAGTGTTGTTCTGGGGACCTTTAATGTGGGGGACCAAGGTGAAGGAATTGTTCCTGACCTTAACCGGGTAATTGGGGCGGTTTTGAATTCTATTGGAATTGGTGGACAGAGCACTGGTGGTGTTGCAAATGGCACACAGTCTTCTTCAGCAAATCCGTCTACTCAGGGTCCTTCTGGGAATGAGGGCGGAGGAATGAATCAGAATCAGACCCAGAACCAGAACCAATCAGGAAATCAAGCACAGACTGCACAGACATTTCCTAACCAACCATTCCCATCTTTACCTCAAGTGGTTCAGATTCCTCTTGCTGCAGGATCCATAACTGTGCCATCACTTAGTGCACCAATTCCTCATTCACTGGATACTCTTTCTGAGTTTATAAGTCGCATGGAGCAGATGTTATCACAAAATGGTTATCAAACAAATTCGTCTTCATTGAGTGGAGGAGAGCAAATACATGCAGAATTACCCTCCAACCGACAAGGGTTGCCAACAGTTGAAGCATTAAGTGCTGTCTTGCATCGTGCTGAACGGCTGCTCAGTGGTCATGCAATTGCTGCACTATCTCATATTGCAGGACGCCTGGAGCGAGAAGGAACTACTACTGACCCAAATATAAGGGGTCAAATACAGTCTGAGTCAATGCAAATAGGACTTGCCATGCAGCATTTGGGTGCATTTCTACTTGAGCTTGGCCGTACAATCTTGACACTGCGTATGGGACAGTCTTCTGTGGAGTCTGCCGTCAATGCTGGGCCAGCAGTTTATATTTCTCCATCAGGACCTAATTCTATCATGGTGCAGCCTTTCCCACTTCAAACAAGCTCCCTGTTTGGTGGTTCTGTTCCTCCTTCAACTCCTGCTACATTTGGTACTGTTGGTGTTGGAAATGCCCCGCGGAATGTAAACATCCATATACATGCCGGCACTTCTCTTGCGCCAATTGGTTCTCGGCCAAATAATGGGGAAGGGGCACCAAATGAACGGCGTAATGCTTCTGGCTCTGGTGATTTAGGTTCAATGCGTGCTTTACCTGTGAGAAATCTCATTGCTGCAGCTGTACCAGCATACCCTTCTGGTGTTGGGACCGTTAGTGGCATGCAACCCAGTGGTGTTCCTACTTCACAACTGCCTTCTGATTCAGTTACATTATCATCTGTTATAGCTGATATCAATTCTCGCGCTAGAAACATTTTAGGAAATATTCGAGGAGATAGTGCAGTTCCGTCAGGTCAAGCGGAGTCAACCAACCGGGACTTGCCTGTTGGGAGGGAATCACAGCCTACTCCTGGAAATGAACAGCTAGATACCATGGAGGCAAATGCTGCTGAAGCTTCCAGTGTGTTGTCAGTTGCTTGCACATCTGAAAGTGGAGTATGGAAGCCCCAACCTGAGGCAGCTCAAACTTCTAACAATGAGGAGAGAGATGTTTTGAGCAACACATTTGGTTCAACTTCTCCGAATCAAGATTCATTAAGTTGGTCAAGAGGAGAAAAACTAGAAAAGTCAGAAAATGCACAAGAAAATGCTCAATCTGCTGGTGAAAAATATGCAACTGAAAGTGCCAAACCTGTTCCTCTAGGACTGGGTGCGAGTGGCTTGGAGCGTAAGAGGAGAGCGAGACCGCAACATCCTGTAAGTAGAGGTACTGATGATGGATCAGACAGTTCTTCAGGTAATCAAAATCAGCAATCCAGGACTAGTGGTCATAATGTATTGCAAGATCTTGCAAGTCATGGAACTTCTATGAACCAAAGAAATGCTAATGGTCCATCCCAAGTCCCTGCATCCCCTGGTGACGGCCAGATTGATGTGGCAGGTGTTATGTCTCAGGTCTTGCATAGCCCTGCTTTGAATGGTTTGTTGGCAGGGGTTTCACAGCAGACTGGAGTCGGCTCACCTGATGTCTTGAGGAACATGTTGCAGCAGTTCACACAGAGCCCACAGATGAGGAACACTGTCAATCAAATTGCCCAACAGGTTGGCAGTCAGGATATGGGGAACATGTTTGCTGGGATGGAAAGAGGGCAAGGTAGTGGCTTTGACTTTTCAAGGATGCTTCAGCAGATGATGCCCATTGTATCTCAAGCTCTTGGAGGTGGAACTCCTCAGTCACTCTCTGCTGAAAGGAGAGATCCCCAGGCACTCTATGGAGATGGAACGCATAGCAGGGATGAAAACATTGATGATCAAAGTTTACAGATCAATCTGCAACCAGTGGTAGAGAGGATGGAACACCTTAGTCCACAGTCAGATGTTTTCCGTACGGTGGTTGAAAATGCTATTCAGCTATCCGGAAGTTCTTATAATGGTCTTCTGGATGAGTTATGTAGCGATGAGTTTCTTGCCGGTGACTATGTGGAGATGTTGCGACATGATGTGAGTCAGCGGCTGAATAGGGATTCTGGGCGAGACTAA 2823 0.4601 MAGQSSNDAPSASNVSAELSDSTVQLNVKTLDSHSYSFQVDKNMLVSLLKEKIANETGVPVGQQRLIFRGKVLKDNHVLSEYHVENGDTLHLVQRQLNQSQTPDTSSGETTGTSGNRGNDASSWMPHNRVGQISHSVVLGTFNVGDQGEGIVPDLNRVIGAVLNSIGIGGQSTGGVANGTQSSSANPSTQGPSGNEGGGMNQNQTQNQNQSGNQAQTAQTFPNQPFPSLPQVVQIPLAAGSITVPSLSAPIPHSLDTLSEFISRMEQMLSQNGYQTNSSSLSGGEQIHAELPSNRQGLPTVEALSAVLHRAERLLSGHAIAALSHIAGRLEREGTTTDPNIRGQIQSESMQIGLAMQHLGAFLLELGRTILTLRMGQSSVESAVNAGPAVYISPSGPNSIMVQPFPLQTSSLFGGSVPPSTPATFGTVGVGNAPRNVNIHIHAGTSLAPIGSRPNNGEGAPNERRNASGSGDLGSMRALPVRNLIAAAVPAYPSGVGTVSGMQPSGVPTSQLPSDSVTLSSVIADINSRARNILGNIRGDSAVPSGQAESTNRDLPVGRESQPTPGNEQLDTMEANAAEASSVLSVACTSESGVWKPQPEAAQTSNNEERDVLSNTFGSTSPNQDSLSWSRGEKLEKSENAQENAQSAGEKYATESAKPVPLGLGASGLERKRRARPQHPVSRGTDDGSDSSSGNQNQQSRTSGHNVLQDLASHGTSMNQRNANGPSQVPASPGDGQIDVAGVMSQVLHSPALNGLLAGVSQQTGVGSPDVLRNMLQQFTQSPQMRNTVNQIAQQVGSQDMGNMFAGMERGQGSGFDFSRMLQQMMPIVSQALGGGTPQSLSAERRDPQALYGDGTHSRDENIDDQSLQINLQPVVERMEHLSPQSDVFRTVVENAIQLSGSSYNGLLDELCSDEFLAGDYVEMLRHDVSQRLNRDSGRD 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00042 940 ProSiteProfiles Ubiquitin domain profile. 24 99 IPR000626 GO:0005515
Accr3g00042 940 MobiDBLite consensus disorder prediction 669 683 - -
Accr3g00042 940 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 11 939 - -
Accr3g00042 940 MobiDBLite consensus disorder prediction 174 227 - -
Accr3g00042 940 MobiDBLite consensus disorder prediction 446 474 - -
Accr3g00042 940 MobiDBLite consensus disorder prediction 591 629 - -
Accr3g00042 940 SMART ubq_7 24 95 IPR000626 GO:0005515
Accr3g00042 940 MobiDBLite consensus disorder prediction 684 704 - -
Accr3g00042 940 MobiDBLite consensus disorder prediction 537 569 - -
Accr3g00042 940 Gene3D - 12 109 - -
Accr3g00042 940 MobiDBLite consensus disorder prediction 716 731 - -
Accr3g00042 940 MobiDBLite consensus disorder prediction 543 569 - -
Accr3g00042 940 MobiDBLite consensus disorder prediction 716 738 - -
Accr3g00042 940 CDD Ubl_ubiquitin_like 26 93 - -
Accr3g00042 940 MobiDBLite consensus disorder prediction 591 704 - -
Accr3g00042 940 MobiDBLite consensus disorder prediction 97 127 - -
Accr3g00042 940 FunFam Large proline-rich protein BAG6 16 109 - -
Accr3g00042 940 Pfam Ubiquitin family 26 96 IPR000626 GO:0005515
Accr3g00042 940 SUPERFAMILY Ubiquitin-like 20 97 IPR029071 -
Accr3g00042 940 PRINTS Ubiquitin signature 76 97 IPR019956 -
Accr3g00042 940 PRINTS Ubiquitin signature 34 54 IPR019956 -
Accr3g00042 940 PRINTS Ubiquitin signature 55 75 IPR019956 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00042 Accr-Chr3 586356 594280 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00042 24 95 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.278 9.99e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00042 - - gmx:100783611 1182.55